Gene: guca1c - ENSDARG00000030758 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000030758
Name	guca1c
Description	guanylate cyclase activator 1C [Source:ZFIN;Acc:ZDB-GENE-030829-1]
Organism	Danio rerio (zebrafish)
Synonym(s)	gcap3
Paralog(s)	49 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	267 267 1.65e3	99.11 99.11 94.46	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	546 546 1.40e3	98.18 98.18 95.32	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage	6.17e3 6.17e3 2.15e4 2.28e4 2.31e4	79.35 79.35 28.14 23.76 22.67	AEIR AEIR AEIR AEIR AEIR
UBERON:0001787	photoreceptor layer of retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:0000941	cranial nerve II	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec	8.96e3 8.96e3 1.49e4	70.00 70.00 50.00	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth UBERON:0000069larval stage	9.44e3 9.44e3 1.17e4 1.62e4	68.41 68.41 60.77 45.83	AEIR AEIR AEIR AEIR
UBERON:0001789	outer nuclear layer of retina	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.07e4 1.07e4	64.28 64.28	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 8 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage UBERON:0000104life cycle ZFS:0000040Larval:Days 14-20 ZFS:0000042Juvenile:Days 30-44 ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000036Larval:Day 4	1.37e4 1.37e4 1.46e4 1.50e4 1.51e4 1.66e4 1.79e4 1.81e4 1.83e4	54.26 54.26 51.12 49.92 49.33 44.35 40.18 39.42 38.57	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000465	material anatomical entity	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.41e4 1.41e4	52.75 52.75	AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.77 40.77	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.94e4 1.94e4	35.15 35.15	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.94e4 1.94e4	34.88 34.88	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	1.98e4 1.98e4 2.02e4	33.76 33.76 32.21	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.16e4 2.16e4	27.60 27.60	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.18e4 2.18e4	27.07 27.07	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Neopterygii	1 gene ENSDARG00000044629 guca1d	Compare expression	[+]
Eukaryota	49 genes ENSDARG00000008030 myl9b ENSDARG00000008494 myl6 ENSDARG00000009637 rcvrn3 ENSDARG00000010454 guca1a ENSDARG00000011334 ncaldb ENSDARG00000011400 tnnc1a ENSDARG00000011519 myl4 ENSDARG00000011825 cetn3 ENSDARG00000014196 myl1 ENSDARG00000015050 calm3a ENSDARG00000017441 mylz3 ENSDARG00000018397 hpca ENSDARG00000019096 myl7 ENSDARG00000019902 rcvrn2 ENSDARG00000021811 calm1a ENSDARG00000022763 hpcal1 ENSDARG00000023228 vsnl1a ENSDARG00000025326 myl12.2 ENSDARG00000025788 chp2 ENSDARG00000031427 calm2a ENSDARG00000032976 cmlc1 ENSDARG00000033738 zgc:153867 ENSDARG00000034187 calm1b ENSDARG00000037539 tnnc1b ENSDARG00000038123 myl9a ENSDARG00000041215 cetn4 ENSDARG00000042245 myl13 ENSDARG00000044053 vsnl1b ENSDARG00000044629 guca1d ENSDARG00000052223 rcvrna ENSDARG00000052859 chp1 ENSDARG00000053424 myl2b ENSDARG00000054186 ncs1b ENSDARG00000055229 ncs1a ENSDARG00000059257 RCVRN (1 to many) ENSDARG00000062592 myl10 ENSDARG00000069360 ppp3r1b ENSDARG00000070491 hpcal4 ENSDARG00000070688 ncalda ENSDARG00000070835 tnnc2 ENSDARG00000074057 calm3b ENSDARG00000074323 efcab2 ENSDARG00000092659 ppp3r1a ENSDARG00000095002 TNNC2 (1 to many) ENSDARG00000099712 MYL3 ENSDARG00000099766 myl12.1 ENSDARG00000100825 calm3a ENSDARG00000101510 cetn2 ENSDARG00000104722 MYL2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000030758.

Cross-references

Ensembl	ENSDARG00000030758 (guca1c)
ZFIN	ZDB-GENE-030829-1 (guca1c)
EMBL	AY044457, BC044346, CABZ01086033, CABZ01086034, CABZ01086035
Uniprot/SPTREMBL	Q8UUX9, Q8UUX9_DANRE