D. rerio Gene: phf23a - ENSDARG00000030887 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030887
Namephf23a
DescriptionPHD finger protein 23a [Source:ZFIN;Acc:ZDB-GENE-050320-67]
OrganismDanio rerio (zebrafish)
Synonym(s)fb36g07, phf23, wu:fa04c06, wu:fb36g07, wu:fb71c05, zgc:112942

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.99e3
  • 1.99e3
  • 3.70e3
  • 3.71e3
  • 4.05e3
  • 7.85e3
93.35
  • 93.35
  • 87.60
  • 87.58
  • 86.46
  • 73.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.24
  • 91.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
89.30
  • 89.30
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.75e3
  • 3.75e3
87.46
  • 87.46
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.84
  • 85.84
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
4.26e3
  • 4.26e3
  • 5.47e3
  • 8.59e3
  • 9.00e3
  • 9.48e3
  • 9.54e3
85.75
  • 85.75
  • 81.67
  • 71.24
  • 69.87
  • 68.25
  • 68.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.26e3
  • 4.26e3
  • 8.15e3
  • 1.19e4
  • 1.24e4
85.74
  • 85.74
  • 72.72
  • 60.28
  • 58.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.44e3
  • 4.44e3
  • 6.19e3
  • 6.86e3
  • 7.47e3
  • 8.13e3
  • 1.09e4
  • 1.19e4
  • 1.19e4
  • 1.19e4
  • 1.45e4
85.12
  • 85.12
  • 79.27
  • 77.04
  • 75.00
  • 72.79
  • 63.39
  • 60.09
  • 60.05
  • 60.04
  • 51.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.82
  • 84.82
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
4.68e3
  • 4.68e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.05e3
  • 8.07e3
  • 8.27e3
  • 8.96e3
  • 8.96e3
  • 9.27e3
  • 9.33e3
  • 9.63e3
  • 1.03e4
  • 1.04e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
  • 1.12e4
  • 1.18e4
84.32
  • 84.32
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 73.03
  • 72.99
  • 72.32
  • 69.99
  • 69.99
  • 68.95
  • 68.77
  • 67.75
  • 65.63
  • 65.21
  • 64.87
  • 64.77
  • 63.44
  • 62.42
  • 60.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.74e3
  • 4.74e3
84.14
  • 84.14
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
83.99
  • 83.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.33
  • 81.33
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.87
  • 79.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
78.76
  • 78.76
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.42e3
  • 6.42e3
78.52
  • 78.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
  • 8.61e3
77.32
  • 77.32
  • 71.17
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.14
  • 76.14
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.62
  • 75.62
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.35e3
  • 7.35e3
75.39
  • 75.39
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.64e3
  • 7.64e3
  • 7.66e3
74.41
  • 74.41
  • 74.34
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.60
  • 73.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.04e3
  • 8.04e3
73.10
  • 73.10
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.31e3
  • 8.31e3
  • 1.08e4
  • 1.27e4
72.18
  • 72.18
  • 63.93
  • 57.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.40e3
  • 9.40e3
  • 1.05e4
68.54
  • 68.54
  • 64.95
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.56
  • 65.56
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.13e4
  • 1.13e4
62.24
  • 62.24
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.27e4
57.88
  • 57.88
  • 57.38
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC091667, BC153421, BC163957, BX119902
EnsemblENSDARG00000030887 (phf23a)
Uniprot/SPTREMBLA8E514, A8E514_DANRE
Uniprot/SWISSPROTPF23A_DANRE, Q5BJ10
ZFINZDB-GENE-050320-67 (phf23a)

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