D. rerio Gene: pde12 - ENSDARG00000030964 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030964
Namepde12
Descriptionphosphodiesterase 12 [Source:ZFIN;Acc:ZDB-GENE-060519-25]
OrganismDanio rerio (zebrafish)
Synonym(s)2'-pde, fc58c05, fi42f03, wu:fc58c05, wu:fi42f03, zgc:136374

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.83
  • 83.83
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
5.71e3
  • 5.71e3
  • 6.39e3
  • 6.78e3
  • 7.11e3
  • 8.80e3
80.89
  • 80.89
  • 78.61
  • 77.29
  • 76.19
  • 70.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
6.03e3
  • 6.03e3
  • 6.15e3
  • 8.62e3
  • 8.68e3
  • 1.19e4
  • 1.21e4
79.81
  • 79.81
  • 79.39
  • 71.12
  • 70.92
  • 60.27
  • 59.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.46e3
  • 6.46e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.05
  • 77.05
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.98
  • 76.98
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.89
  • 75.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.57
  • 74.57
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
73.78
  • 73.78
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
73.69
  • 73.69
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.86e3
  • 7.86e3
73.69
  • 73.69
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
8.08e3
  • 8.08e3
  • 9.18e3
  • 9.20e3
  • 1.02e4
  • 1.10e4
  • 1.12e4
  • 1.16e4
  • 1.20e4
  • 1.23e4
  • 1.42e4
72.96
  • 72.96
  • 69.27
  • 69.18
  • 65.87
  • 63.12
  • 62.46
  • 61.22
  • 59.76
  • 58.73
  • 52.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
69.59
  • 69.59
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.13e3
  • 9.13e3
69.43
  • 69.43
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.23e3
  • 9.23e3
  • 9.46e3
69.08
  • 69.08
  • 68.34
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.32e3
  • 9.32e3
68.78
  • 68.78
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.35e3
  • 9.35e3
68.70
  • 68.70
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.48e3
  • 9.48e3
  • 1.00e4
  • 1.05e4
  • 1.06e4
  • 1.12e4
  • 1.16e4
  • 1.20e4
  • 1.31e4
  • 1.36e4
  • 1.37e4
  • 1.40e4
  • 1.45e4
  • 1.47e4
  • 1.47e4
68.27
  • 68.27
  • 66.46
  • 64.96
  • 64.36
  • 62.57
  • 61.13
  • 59.69
  • 56.21
  • 54.31
  • 54.07
  • 53.02
  • 51.28
  • 50.68
  • 50.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.85e3
  • 9.85e3
  • 1.00e4
  • 1.08e4
  • 1.24e4
67.02
  • 67.02
  • 66.35
  • 63.89
  • 58.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
66.87
  • 66.87
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.79
  • 66.79
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
  • 1.08e4
66.08
  • 66.08
  • 63.70
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
66.00
  • 66.00
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.07e4
64.32
  • 64.32
  • 64.11
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.09e4
  • 1.09e4
63.54
  • 63.54
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.34
  • 62.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.25
  • 59.25
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.39e4
  • 1.39e4
  • 1.41e4
  • 1.53e4
53.47
  • 53.47
  • 52.77
  • 48.75
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCU638695, FP067440
EnsemblENSDARG00000030964 (pde12)
Uniprot/SPTREMBLF1RBC5, F1RBC5_DANRE
ZFINZDB-GENE-060519-25 (pde12)

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