D. rerio Gene: veph1 - ENSDARG00000031095 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031095
Nameveph1
Descriptionventricular zone expressed PH domain-containing 1 [Source:ZFIN;Acc:ZDB-GENE-041014-375]
OrganismDanio rerio (zebrafish)
Synonym(s)veph, zveph-a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.32e3
  • 1.32e3
  • 4.27e3
  • 5.98e3
95.59
  • 95.59
  • 85.71
  • 79.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.12e4
  • 1.34e4
  • 1.49e4
  • 1.88e4
63.63
  • 63.63
  • 62.49
  • 54.99
  • 49.99
  • 36.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.84
  • 54.84
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.41e4
  • 1.41e4
  • 1.58e4
52.90
  • 52.90
  • 47.05
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.72
  • 50.72
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.51e4
  • 1.51e4
49.46
  • 49.46
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.37
  • 48.37
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.72e4
  • 1.72e4
  • 1.86e4
  • 1.88e4
  • 2.00e4
  • 2.10e4
42.34
  • 42.34
  • 37.83
  • 37.05
  • 32.95
  • 29.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.87
  • 40.87
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.35
  • 38.35
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
  • 2.00e4
35.68
  • 35.68
  • 33.01
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.92e4
  • 1.92e4
  • 2.24e4
35.60
  • 35.60
  • 25.02
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.88
  • 34.88
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
  • 2.25e4
31.82
  • 31.82
  • 24.55
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.25
  • 31.25
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.13
  • 28.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.35
  • 25.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000031095 (veph1)
ZFINZDB-GENE-041014-375 (veph1)

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