D. rerio Gene: irx3b - ENSDARG00000031138 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031138
Nameirx3b
Descriptioniroquois homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-030131-525]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb36a07, zgc:76885, ziro3b

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
87.71
  • 87.71
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
4.90e3
  • 4.90e3
  • 5.16e3
  • 5.58e3
  • 5.59e3
  • 1.17e4
83.61
  • 83.61
  • 82.72
  • 81.32
  • 81.29
  • 60.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.48e3
  • 7.48e3
  • 1.60e4
74.95
  • 74.95
  • 46.38
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.49e3
  • 8.49e3
  • 1.49e4
71.57
  • 71.57
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0007293presumptive rhombomere 6
  • ZFS:0000024Segmentation:5-9 somites
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.47e3
  • 9.47e3
68.30
  • 68.30
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.04
  • 67.04
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007308pronephric distal early tubule
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
  • 1.26e4
  • 1.32e4
  • 1.34e4
  • 1.41e4
64.98
  • 64.98
  • 57.87
  • 55.86
  • 54.97
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 2.08e4
64.60
  • 64.60
  • 30.23
AEIR
  • AEIR
  • AEIR
UBERON:0005519rhombomere 6
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.15e4
  • 1.15e4
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.41e4
61.09
  • 61.09
  • 60.39
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000026Segmentation:14-19 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.29e4
  • 1.34e4
57.12
  • 57.12
  • 56.65
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 55.24
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.36
  • 56.36
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
55.04
  • 55.04
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.34e4
54.97
  • 54.97
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.41
  • 53.41
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000026Segmentation:14-19 somites
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
1.42e4
  • 1.42e4
  • 1.42e4
52.60
  • 52.60
  • 52.35
AEIR
  • AEIR
  • AEIR
UBERON:0007289presumptive rhombomere 1
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007290presumptive rhombomere 3
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007292presumptive rhombomere 5
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.51e4
  • 1.51e4
49.32
  • 49.32
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.29
  • 46.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.68
  • 43.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.90
  • 35.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.41
  • 29.41
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.54
  • 23.54
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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