Gene: commd1 - ENSDARG00000031203 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000031203
Name	commd1
Description	copper metabolism (Murr1) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060512-329]
Organism	Danio rerio (zebrafish)
Synonym(s)	murr1, si:ch211-213b8.2, zgc:136584
Orthologs(s)	19 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	2.04e3 2.04e3 6.15e3	93.17 93.17 79.41	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	2.70e3 2.70e3	90.96 90.96	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.75e3 2.75e3	90.78 90.78	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage	2.76e3 2.76e3 3.18e3 4.24e3 5.51e3 7.26e3	90.75 90.75 89.36 85.80 81.56 75.68	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.80e3 2.80e3	90.64 90.64	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	3.20e3 3.20e3	89.29 89.29	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	3.36e3 3.36e3	88.76 88.76	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	3.75e3 3.75e3	87.45 87.45	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	4.01e3 4.01e3	86.58 86.58	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	4.08e3 4.08e3	86.36 86.36	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	4.11e3 4.11e3	86.24 86.24	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	4.13e3 4.13e3 4.93e3	86.18 86.18 83.50	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	4.17e3 4.17e3	86.04 86.04	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	4.25e3 4.25e3	85.79 85.79	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	4.36e3 4.36e3	85.41 85.41	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	4.46e3 4.46e3	85.07 85.07	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	5.55e3 5.55e3	81.42 81.42	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	5.77e3 5.77e3	80.69 80.69	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.88e3 5.88e3	80.30 80.30	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	6.69e3 6.69e3	77.61 77.61	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	7.08e3 7.08e3	76.28 76.28	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	8.01e3 8.01e3 1.10e4	73.18 73.18 63.25	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	9.33e3 9.33e3 1.10e4	68.75 68.75 63.28	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	9.54e3 9.54e3 1.09e4	68.06 68.06 63.37	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.14e4 1.14e4	61.96 61.96	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000173163 COMMD1 ENSMUSG00000051355 Commd1 ENSMUSG00000098650 Gm28048 ENSPTRG00000011966 COMMD1 ENSGGOG00000007602 COMMD1 ENSMMUG00000030824 COMMD1 ENSRNOG00000009281 Commd1 ENSBTAG00000019867 COMMD1 ENSSSCG00000008376 COMMD1 ENSECAG00000016963 COMMD1 ENSOCUG00000001093 COMMD1 ENSCAFG00000003090 COMMD1 ENSFCAG00000027737 COMMD1 ENSCPOG00000002088 COMMD1 ENSEEUG00000015197 COMMD1 ENSOANG00000012420 COMMD1 ENSGALG00000008931 COMMD1 ENSACAG00000005706 COMMD1 ENSXETG00000002235 commd1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000031203.

Cross-references

Ensembl	ENSDARG00000031203 (commd1)
ZFIN	ZDB-GENE-060512-329 (commd1)
EMBL	BX927391
Uniprot/SPTREMBL	B8A6D0, B8A6D0_DANRE