D. rerio Gene: arcn1b - ENSDARG00000031214 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031214
Namearcn1b
Descriptionarchain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]
OrganismDanio rerio (zebrafish)
Synonym(s)arcn1l, arcn1l {eco:0000313|embl:aah50499.1,gn eco:0000313|zfin:zdb-gene-040121-7}, wu:fa10d11, wu:fb01b08, wu:fb76d02, wu:fc52b08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.49e3
  • 1.49e3
  • 1.66e3
  • 3.11e3
  • 3.35e3
  • 3.76e3
95.01
  • 95.01
  • 94.44
  • 89.59
  • 88.78
  • 87.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.58e3
  • 1.58e3
  • 1.50e4
94.72
  • 94.72
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
94.06
  • 94.06
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
  • 3.84e3
92.01
  • 92.01
  • 87.14
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
2.43e3
  • 2.43e3
  • 2.61e3
  • 3.01e3
  • 3.27e3
  • 3.67e3
  • 3.79e3
  • 4.48e3
  • 4.82e3
  • 5.05e3
  • 5.08e3
91.86
  • 91.86
  • 91.27
  • 89.94
  • 89.06
  • 87.70
  • 87.31
  • 84.99
  • 83.86
  • 83.08
  • 83.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.77
  • 91.77
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.56e3
  • 2.56e3
91.44
  • 91.44
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.65e3
  • 2.65e3
91.15
  • 91.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
91.01
  • 91.01
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.73
  • 90.73
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.78e3
  • 2.78e3
  • 3.67e3
  • 4.85e3
  • 5.75e3
  • 5.88e3
  • 6.49e3
90.71
  • 90.71
  • 87.70
  • 83.75
  • 80.73
  • 80.32
  • 78.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.78e3
  • 2.78e3
  • 4.37e3
90.70
  • 90.70
  • 85.38
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.83e3
  • 2.83e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.45
  • 90.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.06
  • 90.06
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
  • 4.17e3
89.91
  • 89.91
  • 86.03
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.07e3
  • 3.07e3
89.72
  • 89.72
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.29e3
  • 3.29e3
  • 4.38e3
  • 5.25e3
  • 5.92e3
89.00
  • 89.00
  • 85.34
  • 82.42
  • 80.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.34e3
  • 3.34e3
88.82
  • 88.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.68
  • 88.68
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.39e3
  • 3.39e3
88.64
  • 88.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.51
  • 88.51
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.46e3
  • 3.46e3
88.42
  • 88.42
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
  • 3.96e3
  • 3.97e3
  • 4.17e3
  • 4.27e3
  • 4.28e3
  • 5.03e3
  • 5.04e3
  • 5.15e3
  • 5.44e3
  • 5.46e3
  • 5.64e3
  • 5.79e3
  • 5.95e3
  • 6.22e3
  • 1.35e4
  • 1.39e4
88.10
  • 88.10
  • 86.74
  • 86.71
  • 86.03
  • 85.70
  • 85.68
  • 83.15
  • 83.13
  • 82.77
  • 81.80
  • 81.73
  • 81.12
  • 80.62
  • 80.10
  • 79.18
  • 54.65
  • 53.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
  • 4.49e3
87.86
  • 87.86
  • 84.96
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.87e3
  • 3.87e3
  • 4.19e3
  • 4.77e3
87.06
  • 87.06
  • 85.98
  • 84.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
86.60
  • 86.60
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.28e3
  • 4.28e3
85.67
  • 85.67
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.03
  • 84.03
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.15e3
  • 5.15e3
82.76
  • 82.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.58
  • 81.58
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.63e3
  • 5.63e3
81.14
  • 81.14
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.20
  • 80.20
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.22e3
  • 6.22e3
  • 6.22e3
79.16
  • 79.16
  • 79.16
AEIR
  • AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.15e3
74.99
  • 74.99
  • 72.72
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.65e3
  • 8.65e3
  • 8.96e3
71.04
  • 71.04
  • 69.98
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.65e3
  • 8.65e3
  • 8.65e3
71.04
  • 71.04
  • 71.04
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.08e4
  • 1.08e4
  • 1.34e4
  • 1.36e4
  • 1.36e4
63.97
  • 63.97
  • 54.97
  • 54.52
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
61.09
  • 61.09
  • 61.09
  • 61.09
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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