D. rerio Gene: podxl - ENSDARG00000031228 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031228
Namepodxl
Descriptionpodocalyxin-like [Source:ZFIN;Acc:ZDB-GENE-030131-2805]
OrganismDanio rerio (zebrafish)
Synonym(s)fc18d02, si:dkey-146n1.1, wu:fc18d02

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
540
  • 540
98.20
  • 98.20
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
578
  • 578
  • 727
  • 1.21e4
98.07
  • 98.07
  • 97.57
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.04
  • 96.04
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.29
  • 92.29
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.52e3
  • 2.52e3
  • 4.21e3
  • 4.58e3
  • 5.26e3
  • 5.38e3
  • 5.81e3
  • 6.50e3
  • 9.21e3
  • 1.09e4
  • 1.12e4
91.57
  • 91.57
  • 85.91
  • 84.66
  • 82.39
  • 81.99
  • 80.54
  • 78.23
  • 69.16
  • 63.45
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.09e3
  • 3.09e3
  • 8.41e3
89.64
  • 89.64
  • 71.84
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.55
  • 89.55
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.60
  • 84.60
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.15
  • 84.15
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.77e3
  • 4.77e3
  • 4.90e3
  • 7.38e3
84.03
  • 84.03
  • 83.59
  • 75.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 6.74e3
83.32
  • 83.32
  • 77.44
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
82.00
  • 82.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.72
  • 81.72
AEIR
  • AEIR
ZFA:0001673pronephric podocyte (Danio)
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
5.97e3
  • 5.97e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
80.00
  • 80.00
  • 75.00
  • 66.66
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.15e3
  • 6.15e3
  • 6.15e3
  • 9.34e3
  • 9.67e3
  • 9.67e3
79.40
  • 79.40
  • 79.40
  • 68.74
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.30e3
  • 6.30e3
78.91
  • 78.91
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.78e3
  • 6.78e3
77.31
  • 77.31
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
76.79
  • 76.79
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.94
  • 75.94
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.04e3
  • 9.33e3
  • 1.05e4
  • 1.07e4
  • 1.07e4
75.00
  • 75.00
  • 74.99
  • 73.07
  • 68.74
  • 64.99
  • 64.28
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004537blood vasculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.53e3
74.99
  • 74.99
  • 71.43
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.94e3
  • 7.94e3
  • 9.87e3
73.41
  • 73.41
  • 66.95
AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.30e3
  • 8.30e3
  • 8.96e3
72.21
  • 72.21
  • 69.98
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.91e3
  • 8.91e3
  • 9.13e3
70.18
  • 70.18
  • 69.42
AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.08e4
66.65
  • 66.65
  • 65.37
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.01e4
  • 1.01e4
  • 1.75e4
66.12
  • 66.12
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.79
  • 62.79
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
1.14e4
  • 1.14e4
  • 1.17e4
  • 1.19e4
  • 1.29e4
  • 1.29e4
  • 1.29e4
  • 1.34e4
  • 1.37e4
  • 1.38e4
  • 1.43e4
  • 1.50e4
  • 1.50e4
  • 1.55e4
  • 1.57e4
61.94
  • 61.94
  • 60.99
  • 60.20
  • 56.88
  • 56.78
  • 56.71
  • 55.01
  • 53.98
  • 53.93
  • 51.99
  • 49.92
  • 49.80
  • 48.20
  • 47.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
59.28
  • 59.28
AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
1.23e4
  • 1.23e4
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0004739pronephric glomerulus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
57.14
  • 57.14
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
57.14
  • 57.14
  • 57.14
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.25
  • 53.25
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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