D. rerio Gene: vamp1 - ENSDARG00000031283 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031283
Namevamp1
Descriptionvesicle-associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2725]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fj59a03, zgc:73378

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
195
  • 195
  • 9.51e3
99.35
  • 99.35
  • 68.15
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
856
  • 856
  • 1.94e3
  • 2.50e3
  • 4.41e3
  • 5.53e3
  • 9.31e3
  • 1.05e4
  • 1.25e4
  • 1.36e4
  • 1.37e4
97.14
  • 97.14
  • 93.51
  • 91.65
  • 85.22
  • 81.50
  • 68.82
  • 64.98
  • 58.00
  • 54.54
  • 54.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
884
  • 884
  • 2.88e3
  • 4.04e3
  • 1.07e4
97.04
  • 97.04
  • 90.37
  • 86.47
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
954
  • 954
96.81
  • 96.81
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.22e3
  • 1.22e3
  • 4.05e3
  • 5.40e3
  • 9.05e3
  • 9.37e3
  • 9.74e3
  • 1.00e4
  • 1.34e4
  • 1.34e4
95.91
  • 95.91
  • 86.45
  • 81.92
  • 69.70
  • 68.63
  • 67.39
  • 66.41
  • 55.20
  • 55.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.59e3
  • 1.59e3
  • 1.81e3
  • 2.89e3
94.69
  • 94.69
  • 93.95
  • 90.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.23e3
  • 6.23e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
6.50e3
  • 6.50e3
  • 6.72e3
  • 1.05e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
  • 1.20e4
  • 1.26e4
78.25
  • 78.25
  • 77.49
  • 64.99
  • 64.98
  • 64.27
  • 64.26
  • 64.26
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.69e3
  • 9.69e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.83
  • 66.83
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.07e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.18e4
  • 1.22e4
  • 1.23e4
66.66
  • 66.66
  • 64.26
  • 62.48
  • 62.48
  • 61.34
  • 60.50
  • 59.06
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.39e4
66.66
  • 66.66
  • 61.88
  • 59.98
  • 58.31
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.19e4
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.23e4
66.65
  • 66.65
  • 64.69
  • 64.69
  • 60.00
  • 59.36
  • 59.36
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.04e4
  • 1.04e4
  • 1.12e4
  • 1.12e4
65.19
  • 65.19
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.08e4
  • 1.08e4
63.81
  • 63.81
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.11e4
  • 1.11e4
62.81
  • 62.81
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.24e4
62.49
  • 62.49
  • 60.70
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.19e4
  • 1.21e4
  • 1.21e4
  • 1.28e4
  • 1.29e4
62.48
  • 62.48
  • 62.48
  • 61.34
  • 60.00
  • 59.36
  • 59.36
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
  • 1.16e4
61.61
  • 61.61
  • 61.22
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.09
  • 54.09
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.52e4
  • 1.52e4
  • 1.74e4
49.21
  • 49.21
  • 41.80
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.65e4
  • 1.65e4
  • 1.66e4
  • 1.75e4
44.74
  • 44.74
  • 44.44
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.68e4
  • 1.68e4
43.72
  • 43.72
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.69e4
  • 1.69e4
  • 1.77e4
43.44
  • 43.44
  • 40.59
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.29
  • 41.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.35
  • 37.35
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.00
  • 37.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.33
  • 34.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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