D. rerio Gene: tmed1a - ENSDARG00000031325 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031325
Nametmed1a
Descriptiontransmembrane p24 trafficking protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-229]
OrganismDanio rerio (zebrafish)
Synonym(s)p24 gamma 1a, tmed1, zgc:92038

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.89e3
  • 2.89e3
  • 4.33e3
  • 6.29e3
  • 1.20e4
  • 1.73e4
90.33
  • 90.33
  • 85.50
  • 78.93
  • 59.91
  • 42.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.78
  • 89.78
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.19
  • 88.19
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
3.59e3
  • 3.59e3
  • 9.72e3
87.97
  • 87.97
  • 67.44
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
3.89e3
  • 3.89e3
  • 5.22e3
86.97
  • 86.97
  • 82.51
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.43e3
  • 5.43e3
  • 9.13e3
81.81
  • 81.81
  • 69.43
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.54e3
  • 5.54e3
  • 1.21e4
81.46
  • 81.46
  • 59.57
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.09
  • 79.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.09
  • 79.09
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.52e3
  • 6.52e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.09e3
  • 7.09e3
76.27
  • 76.27
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.79
  • 74.79
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.63
  • 69.63
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
68.90
  • 68.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.55e3
  • 9.55e3
68.03
  • 68.03
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.26
  • 61.26
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.46e4
  • 1.46e4
51.20
  • 51.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.28
  • 47.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.32
  • 44.32
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.54
  • 41.54
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.27
  • 37.27
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.36
  • 35.36
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
  • 2.17e4
33.70
  • 33.70
  • 27.41
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.11e4
  • 2.11e4
29.19
  • 29.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC078377, BX088529
EnsemblENSDARG00000031325 (tmed1a)
Uniprot/SPTREMBLQ6DBT1, Q6DBT1_DANRE
ZFINZDB-GENE-040801-229 (tmed1a)

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