D. rerio Gene: csrnp1a - ENSDARG00000031426 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031426
Namecsrnp1a
Descriptioncysteine-serine-rich nuclear protein 1a [Source:ZFIN;Acc:ZDB-GENE-070912-475]
OrganismDanio rerio (zebrafish)
Synonym(s)axud1, csrnp1, draxud1-like, si:dkey-24c2.8

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.81e3
  • 2.81e3
  • 1.30e4
90.58
  • 90.58
  • 56.41
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.63
  • 87.63
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:00072368 cell stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
3.73e3
  • 3.73e3
  • 6.79e3
  • 6.97e3
  • 7.91e3
  • 1.56e4
  • 1.60e4
  • 1.65e4
  • 1.66e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
87.50
  • 87.50
  • 77.27
  • 76.66
  • 73.52
  • 47.75
  • 46.29
  • 44.82
  • 44.31
  • 40.38
  • 40.38
  • 40.17
  • 39.84
  • 39.77
  • 39.40
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.23
  • 87.23
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.55
  • 86.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.57e3
  • 4.57e3
  • 1.16e4
84.70
  • 84.70
  • 61.27
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
82.98
  • 82.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.54
  • 81.54
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.72
  • 77.72
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.91e3
  • 6.91e3
76.87
  • 76.87
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
73.70
  • 73.70
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.74
  • 71.74
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.70e3
  • 8.70e3
70.86
  • 70.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.37
  • 70.37
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.11
  • 70.11
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.37e3
  • 9.37e3
68.63
  • 68.63
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.06e4
  • 1.06e4
  • 1.57e4
64.47
  • 64.47
  • 47.54
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.27e4
  • 1.36e4
  • 1.37e4
  • 1.39e4
  • 1.46e4
  • 1.47e4
  • 1.66e4
64.25
  • 64.25
  • 62.58
  • 57.64
  • 54.37
  • 54.14
  • 53.61
  • 51.01
  • 50.81
  • 44.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.39
  • 63.39
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.10e4
  • 1.10e4
  • 1.16e4
  • 1.19e4
  • 1.27e4
  • 1.33e4
  • 1.50e4
63.06
  • 63.06
  • 61.11
  • 60.18
  • 57.55
  • 55.61
  • 49.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
62.51
  • 62.51
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.28e4
  • 1.34e4
62.50
  • 62.50
  • 57.14
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.14e4
  • 1.14e4
  • 1.36e4
  • 1.47e4
  • 1.54e4
61.99
  • 61.99
  • 54.49
  • 50.83
  • 48.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.61
  • 61.61
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.23e4
  • 1.23e4
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.36e4
  • 1.36e4
54.60
  • 54.60
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
  • 1.38e4
53.97
  • 53.97
  • 53.77
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.41e4
  • 1.41e4
  • 1.44e4
  • 1.63e4
52.89
  • 52.89
  • 51.79
  • 45.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX649335
EnsemblENSDARG00000031426 (csrnp1a)
Uniprot/SPTREMBLB0S776, B0S776_DANRE
ZFINZDB-GENE-070912-475 (csrnp1a)

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