D. rerio Gene: tmem200a - ENSDARG00000031540 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031540
Nametmem200a
Descriptiontransmembrane protein 200A [Source:ZFIN;Acc:ZDB-GENE-040724-81]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-45m15.5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 8.96e3
  • 9.96e3
  • 1.07e4
  • 1.12e4
85.71
  • 85.71
  • 69.99
  • 66.66
  • 64.28
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
9.33e3
  • 9.33e3
  • 1.08e4
  • 1.10e4
  • 1.14e4
  • 1.17e4
68.74
  • 68.74
  • 63.87
  • 63.32
  • 61.75
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.73
  • 64.73
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.10e4
  • 1.10e4
  • 1.15e4
  • 1.17e4
  • 1.26e4
  • 1.32e4
  • 1.32e4
  • 1.33e4
63.32
  • 63.32
  • 61.53
  • 60.70
  • 57.68
  • 55.86
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.37
  • 57.37
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.14
  • 56.14
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
  • 1.80e4
50.72
  • 50.72
  • 39.69
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.53e4
  • 1.53e4
  • 1.66e4
  • 2.21e4
  • 2.30e4
  • 2.35e4
48.92
  • 48.92
  • 44.39
  • 26.03
  • 22.89
  • 21.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.74e4
  • 1.74e4
  • 2.04e4
41.77
  • 41.77
  • 31.58
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.42
  • 36.42
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.33
  • 34.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.05
  • 32.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.19
  • 25.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
25.11
  • 25.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC171447, BC171451, BX681416
EnsemblENSDARG00000031540 (tmem200a)
Uniprot/SPTREMBLB7ZV39, B7ZV39_DANRE
Uniprot/SWISSPROTQ5RGQ8, T200A_DANRE
ZFINZDB-GENE-040724-81 (tmem200a)

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