D. rerio Gene: srpk1b - ENSDARG00000031560 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031560
Namesrpk1b
DescriptionSRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:158800

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.38e3
  • 2.38e3
92.04
  • 92.04
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.48
  • 91.48
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.63e3
  • 2.63e3
  • 3.14e3
  • 1.21e4
  • 1.21e4
  • 1.43e4
91.21
  • 91.21
  • 89.49
  • 59.53
  • 59.36
  • 52.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.93e3
  • 2.93e3
  • 3.53e3
  • 6.17e3
  • 7.78e3
  • 8.26e3
  • 1.33e4
  • 1.39e4
  • 1.41e4
  • 1.51e4
  • 1.78e4
90.19
  • 90.19
  • 88.18
  • 79.33
  • 73.96
  • 72.34
  • 55.34
  • 53.32
  • 52.86
  • 49.39
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.74
  • 88.74
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.23e3
  • 4.23e3
  • 5.34e3
  • 1.25e4
  • 1.25e4
  • 1.39e4
  • 1.46e4
85.85
  • 85.85
  • 82.11
  • 58.02
  • 58.01
  • 53.62
  • 51.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.30e3
  • 4.30e3
  • 1.45e4
85.60
  • 85.60
  • 51.38
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
82.68
  • 82.68
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
80.64
  • 80.64
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.58
  • 80.58
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.04e3
  • 6.04e3
79.78
  • 79.78
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
79.58
  • 79.58
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.66
  • 76.66
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.27e3
  • 7.27e3
  • 1.54e4
  • 1.65e4
  • 1.71e4
75.67
  • 75.67
  • 48.40
  • 44.78
  • 42.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.55e3
  • 7.55e3
  • 1.20e4
74.73
  • 74.73
  • 59.92
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.00
  • 72.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.89
  • 70.89
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.36e3
  • 9.36e3
68.66
  • 68.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.47e3
  • 9.47e3
68.29
  • 68.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.32
  • 66.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.11
  • 66.11
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.06e4
  • 1.06e4
  • 1.23e4
  • 1.68e4
64.67
  • 64.67
  • 58.65
  • 43.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.64
  • 59.64
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.28e4
  • 1.28e4
57.27
  • 57.27
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.32e4
  • 1.32e4
55.81
  • 55.81
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.39e4
  • 1.39e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
  • 1.51e4
  • 1.53e4
  • 1.55e4
  • 1.55e4
  • 1.59e4
  • 1.60e4
  • 1.60e4
  • 1.63e4
53.52
  • 53.52
  • 50.90
  • 50.03
  • 49.99
  • 49.87
  • 49.82
  • 49.81
  • 49.80
  • 49.60
  • 49.51
  • 48.70
  • 48.24
  • 48.00
  • 46.85
  • 46.51
  • 46.28
  • 45.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.41e4
  • 1.41e4
52.84
  • 52.84
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.63e4
  • 1.63e4
45.27
  • 45.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCR318593, CT583672
EnsemblENSDARG00000031560 (srpk1b)
Uniprot/SPTREMBLF1REN8, F1REN8_DANRE
ZFINZDB-GENE-070112-2292 (srpk1b)

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