D. rerio Gene: COL5A2 (1 to many) - ENSDARG00000031678 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031678
NameCOL5A2 (1 to many)
Descriptionsi:ch211-198b21.5 [Source:ZFIN;Acc:ZDB-GENE-081104-515]
OrganismDanio rerio (zebrafish)
Synonym(s)col5a2, col5a2l, im:7038599, si:by143e18.1, si:dz167c3.3, wu:fa13f03, wu:fa98d01, wu:fj05e03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
423
  • 423
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
523
  • 523
  • 2.64e3
98.25
  • 98.25
  • 91.15
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
595
  • 595
  • 701
98.01
  • 98.01
  • 97.65
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
679
  • 679
97.73
  • 97.73
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
833
  • 833
  • 1.18e3
  • 1.92e3
  • 2.39e3
  • 3.12e3
  • 3.19e3
  • 5.78e3
  • 6.16e3
  • 1.32e4
  • 1.33e4
97.21
  • 97.21
  • 96.05
  • 93.56
  • 92.00
  • 89.57
  • 89.33
  • 80.66
  • 79.38
  • 55.88
  • 55.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
954
  • 954
96.81
  • 96.81
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.17e3
  • 1.17e3
96.08
  • 96.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
96.07
  • 96.07
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.20e3
  • 1.20e3
  • 1.97e3
  • 2.01e3
  • 2.14e3
  • 2.23e3
  • 2.51e3
  • 3.43e3
  • 4.03e3
  • 4.08e3
  • 1.14e4
95.97
  • 95.97
  • 93.40
  • 93.28
  • 92.84
  • 92.54
  • 91.60
  • 88.51
  • 86.51
  • 86.33
  • 61.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.31e3
  • 1.31e3
  • 1.38e3
  • 1.46e3
95.62
  • 95.62
  • 95.39
  • 95.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.43
  • 94.43
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.08
  • 93.08
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.17e3
  • 2.17e3
  • 1.26e4
92.73
  • 92.73
  • 57.83
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.16
  • 90.16
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.42
  • 87.42
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
  • 1.32e4
78.86
  • 78.86
  • 55.82
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
72.62
  • 72.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.40e3
  • 9.40e3
68.51
  • 68.51
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.35
  • 67.35
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.94
  • 65.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.56
  • 63.56
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.46e4
  • 1.46e4
51.14
  • 51.14
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.69e4
  • 1.69e4
  • 1.75e4
43.34
  • 43.34
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.04
  • 41.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000031678 (COL5A2 (1 to many))
HGNCHGNC:2210 (COL5A2 (1 to many))
Uniprot/SPTREMBLF1QT86, F1QT86_DANRE
ZFINZDB-GENE-081104-515 (si:ch211-198b21.5)

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