D. rerio Gene: ercc1 - ENSDARG00000031680 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031680
Nameercc1
Descriptionexcision repair cross-complementation group 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2606]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:77511

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.88
  • 93.88
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
91.52
  • 91.52
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.32e3
  • 3.32e3
88.87
  • 88.87
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.27e3
  • 4.27e3
  • 1.50e4
  • 1.50e4
85.71
  • 85.71
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
4.27e3
  • 4.27e3
  • 6.49e3
85.69
  • 85.69
  • 78.28
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.71e3
  • 4.71e3
  • 5.46e3
  • 7.50e3
  • 7.63e3
  • 1.05e4
84.22
  • 84.22
  • 81.70
  • 74.90
  • 74.44
  • 64.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.71e3
  • 4.71e3
  • 7.54e3
84.22
  • 84.22
  • 74.74
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.30
  • 82.30
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.68e3
  • 5.68e3
80.99
  • 80.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
80.81
  • 80.81
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.23
  • 80.23
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.10
  • 79.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.85
  • 78.85
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
  • 9.76e3
78.03
  • 78.03
  • 67.33
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
  • 1.36e4
77.39
  • 77.39
  • 54.54
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.87e3
  • 6.87e3
77.00
  • 77.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.91
  • 73.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.79e3
  • 8.79e3
70.57
  • 70.57
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.38e3
  • 9.38e3
68.60
  • 68.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.30
  • 67.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.18
  • 66.18
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.06e4
  • 1.06e4
  • 1.13e4
64.45
  • 64.45
  • 62.26
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.65
  • 62.65
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.30e4
  • 1.30e4
56.62
  • 56.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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