D. rerio Gene: si:busm1-266f07.2 - ENSDARG00000031745 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031745
Namesi:busm1-266f07.2
Descriptionsi:busm1-266f07.2 [Source:ZFIN;Acc:ZDB-GENE-030616-436]
OrganismDanio rerio (zebrafish)
Synonym(s)a2, alpha chain, mhcii, si:dz266f07.2, wu:fa93a04, zgc:113853

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
150
  • 150
99.50
  • 99.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
209
  • 209
99.30
  • 99.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
250
  • 250
99.17
  • 99.17
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
300
  • 300
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
385
  • 385
98.71
  • 98.71
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
498
  • 498
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
519
  • 519
98.27
  • 98.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
687
  • 687
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
701
  • 701
97.66
  • 97.66
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
733
  • 733
97.55
  • 97.55
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.92
  • 94.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.83
  • 94.83
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.60
  • 92.60
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
90.52
  • 90.52
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.25
  • 89.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.79
  • 85.79
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
81.11
  • 81.11
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.40e3
  • 6.40e3
  • 7.53e3
  • 8.30e3
  • 8.40e3
  • 8.79e3
  • 8.96e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
  • 1.10e4
  • 1.10e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
78.56
  • 78.56
  • 74.79
  • 72.21
  • 71.86
  • 70.58
  • 69.99
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 68.17
  • 67.63
  • 66.66
  • 66.66
  • 63.32
  • 63.32
  • 40.59
  • 40.53
  • 40.52
  • 40.40
  • 40.35
  • 40.33
  • 39.75
  • 39.39
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.12
  • 56.12
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.67
  • 51.67
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.83e4
  • 1.83e4
  • 2.09e4
38.78
  • 38.78
  • 29.97
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
2.20e4
  • 2.20e4
  • 2.46e4
  • 2.77e4
26.40
  • 26.40
  • 17.65
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL928944
EnsemblENSDARG00000031745 (si:busm1-266f07.2)
Uniprot/SPTREMBLQ1MTC7, Q1MTC7_DANRE
ZFINZDB-GENE-030616-436 (si:busm1-266f07.2), ZDB-GENE-041010-50 (zgc:103599), ZDB-GENE-141215-47 (si:zfos-2070c2.4)

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