D. rerio Gene: smad6b - ENSDARG00000031763 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031763
Namesmad6b
DescriptionSMAD family member 6b [Source:ZFIN;Acc:ZDB-GENE-050419-198]
OrganismDanio rerio (zebrafish)
Synonym(s)loc564395, si:dkey-288j18.1, si:dkey-288j18.1gn
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
957
  • 957
96.80
  • 96.80
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
  • 7.99e3
92.66
  • 92.66
  • 73.26
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.77e3
  • 5.77e3
  • 9.96e3
80.67
  • 80.67
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.13e3
  • 6.13e3
  • 8.78e3
79.47
  • 79.47
  • 70.62
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
6.69e3
  • 6.69e3
  • 7.01e3
  • 8.34e3
  • 8.41e3
  • 1.11e4
77.59
  • 77.59
  • 76.52
  • 72.06
  • 71.85
  • 62.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
7.16e3
  • 7.16e3
  • 1.44e4
76.02
  • 76.02
  • 51.62
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.64e3
  • 7.64e3
74.41
  • 74.41
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.54e3
  • 8.54e3
  • 8.96e3
71.42
  • 71.42
  • 69.99
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.77
  • 70.77
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
9.13e3
  • 9.13e3
  • 9.13e3
  • 9.34e3
  • 9.67e3
  • 9.96e3
  • 1.05e4
  • 1.07e4
69.43
  • 69.43
  • 69.43
  • 68.74
  • 67.63
  • 66.65
  • 64.98
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.19e3
  • 9.19e3
  • 1.03e4
  • 1.03e4
  • 1.05e4
69.22
  • 69.22
  • 65.61
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.71e3
  • 9.71e3
  • 1.02e4
  • 1.02e4
  • 1.04e4
  • 1.05e4
  • 1.14e4
  • 1.15e4
67.48
  • 67.48
  • 65.89
  • 65.77
  • 65.19
  • 64.98
  • 61.88
  • 61.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.88e3
  • 9.88e3
66.93
  • 66.93
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.08e4
66.65
  • 66.65
  • 65.37
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.04e4
66.65
  • 66.65
  • 65.19
AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
  • 1.10e4
  • 1.10e4
65.61
  • 65.61
  • 63.32
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.08e4
  • 1.08e4
  • 1.12e4
63.87
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.26e4
63.63
  • 63.63
  • 57.79
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.57
  • 62.57
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.54
  • 61.54
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.25
  • 60.25
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.20e4
59.98
  • 59.98
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
59.98
  • 59.98
  • 59.97
  • 59.06
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.00
  • 58.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.00
  • 52.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.04
  • 45.04
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.73
  • 38.73
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.97
  • 35.97
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.05
  • 35.05
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.96
  • 31.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000031763.

Cross-references

EnsemblENSDARG00000031763 (smad6b)
ZFINZDB-GENE-050419-198 (smad6b)
EMBLBC139621, CR533570
Uniprot/SPTREMBLQ1L8Y3, Q1L8Y3_DANRE

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