D. rerio Gene: roraa - ENSDARG00000031768 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031768
Nameroraa
DescriptionRAR-related orphan receptor A, paralog a [Source:ZFIN;Acc:ZDB-GENE-060306-2]
OrganismDanio rerio (zebrafish)
Synonym(s)gb:dq017624, nr1f1-b, rora, rora2, roralpha-b

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002028hindbrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
1.07e3
  • 1.07e3
  • 5.23e3
  • 8.96e3
  • 1.04e4
  • 1.05e4
  • 1.10e4
96.43
  • 96.43
  • 82.49
  • 69.99
  • 65.19
  • 64.98
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.18e3
  • 1.18e3
  • 9.96e3
  • 1.28e4
96.05
  • 96.05
  • 66.65
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
1.24e3
  • 1.24e3
  • 6.29e3
  • 9.33e3
  • 1.05e4
95.84
  • 95.84
  • 78.94
  • 68.74
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.72e3
  • 1.72e3
  • 4.98e3
  • 8.83e3
  • 1.05e4
94.23
  • 94.23
  • 83.33
  • 70.44
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
2.13e3
  • 2.13e3
  • 6.40e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 9.96e3
92.86
  • 92.86
  • 78.57
  • 75.00
  • 73.32
  • 71.43
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
2.49e3
  • 2.49e3
  • 7.47e3
  • 1.07e4
  • 1.09e4
91.67
  • 91.67
  • 74.99
  • 64.28
  • 63.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
  • 1.50e4
90.44
  • 90.44
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.07e3
  • 4.07e3
  • 8.30e3
  • 1.09e4
  • 1.12e4
86.36
  • 86.36
  • 72.22
  • 63.63
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
6.06e3
  • 6.06e3
  • 6.61e3
  • 1.68e4
  • 1.73e4
  • 1.75e4
79.72
  • 79.72
  • 77.86
  • 43.88
  • 42.01
  • 41.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.55e3
  • 7.55e3
74.73
  • 74.73
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.10e3
  • 8.10e3
  • 1.37e4
72.87
  • 72.87
  • 53.96
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.08
  • 72.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.74
  • 69.74
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.04e4
  • 1.04e4
  • 1.36e4
65.15
  • 65.15
  • 54.44
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.05
  • 61.05
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.26e4
  • 1.26e4
  • 1.78e4
57.79
  • 57.79
  • 40.49
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.33e4
57.14
  • 57.14
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.31e4
  • 1.31e4
55.97
  • 55.97
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
54.52
  • 54.52
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.36
  • 50.36
AEIR
  • AEIR
CL:0000121Purkinje cell
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.60
  • 48.60
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.92
  • 44.92
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.14
  • 43.14
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.41
  • 42.41
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.30
  • 41.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.80
  • 38.80
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.46
  • 37.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000031768 (roraa)
Uniprot/SPTREMBLF1QLY4, F1QLY4_DANRE, F8W254, F8W254_DANRE
ZFINZDB-GENE-060306-2 (roraa)

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