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D. rerio Gene: lef1 - ENSDARG00000031894 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031894
Namelef1
Descriptionlymphoid enhancer-binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-990714-26]
OrganismDanio rerio (zebrafish)
Synonym(s)etid310027.1
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:2001157posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.36e3
  • 1.36e3
  • 7.47e3
  • 9.96e3
95.46
  • 95.46
  • 75.00
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.86e3
  • 2.86e3
  • 6.04e3
  • 1.09e4
  • 1.11e4
  • 1.11e4
90.42
  • 90.42
  • 79.78
  • 63.56
  • 62.84
  • 62.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000854interneuromast cell
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000037Larval:Day 5
2.99e3
  • 2.99e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
90.00
  • 90.00
  • 83.34
  • 75.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
  • 1.12e4
  • 1.23e4
89.94
  • 89.94
  • 62.50
  • 58.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
3.84e3
  • 3.84e3
  • 4.76e3
  • 5.16e3
  • 6.04e3
  • 6.39e3
  • 1.14e4
87.13
  • 87.13
  • 84.06
  • 82.73
  • 79.79
  • 78.60
  • 61.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.12e3
  • 4.12e3
  • 1.06e4
86.22
  • 86.22
  • 64.61
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 5.26e3
  • 7.17e3
  • 7.91e3
  • 8.43e3
  • 1.10e4
  • 1.19e4
  • 1.28e4
  • 1.63e4
83.32
  • 83.32
  • 82.39
  • 76.00
  • 73.53
  • 71.78
  • 63.05
  • 60.22
  • 57.15
  • 45.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
5.97e3
  • 5.97e3
  • 1.09e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
80.00
  • 80.00
  • 63.63
  • 53.55
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.99e3
  • 5.99e3
79.95
  • 79.95
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.33e3
  • 6.33e3
78.79
  • 78.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.60e3
  • 6.60e3
  • 9.23e3
  • 1.01e4
77.92
  • 77.92
  • 69.08
  • 66.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072334 cell stage
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
  • 8.42e3
  • 8.85e3
  • 9.08e3
  • 9.58e3
  • 9.94e3
  • 1.09e4
  • 1.13e4
  • 1.15e4
  • 1.22e4
  • 1.24e4
  • 1.26e4
  • 1.31e4
  • 1.32e4
  • 1.44e4
  • 1.50e4
77.27
  • 77.27
  • 71.81
  • 70.38
  • 69.59
  • 67.92
  • 66.72
  • 63.39
  • 62.17
  • 61.33
  • 59.08
  • 58.38
  • 57.96
  • 56.21
  • 55.70
  • 51.88
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.82e3
  • 6.82e3
77.18
  • 77.18
AEIR
  • AEIR
UBERON:2005116secondary posterior lateral line primordium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
  • 1.73e4
73.83
  • 73.83
  • 42.16
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.64e3
  • 8.64e3
71.09
  • 71.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.47e3
  • 9.47e3
68.29
  • 68.29
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.18e4
  • 1.23e4
  • 1.30e4
  • 1.33e4
66.67
  • 66.67
  • 60.39
  • 58.67
  • 56.49
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.51
  • 66.51
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.11e4
  • 1.11e4
  • 1.33e4
  • 1.36e4
62.88
  • 62.88
  • 55.53
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.19e4
  • 1.19e4
62.50
  • 62.50
  • 60.00
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.39e4
62.50
  • 62.50
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0002541germ ring
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.14e4
62.49
  • 62.49
  • 61.88
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.28e4
  • 1.31e4
  • 1.41e4
  • 1.41e4
61.88
  • 61.88
  • 57.13
  • 56.23
  • 52.92
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.21
  • 61.21
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
1.19e4
  • 1.19e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.28e4
  • 1.31e4
  • 1.49e4
60.00
  • 60.00
  • 59.98
  • 58.31
  • 58.31
  • 57.12
  • 56.23
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000026Segmentation:14-19 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.19e4
  • 1.19e4
  • 1.39e4
59.99
  • 59.99
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.86
  • 59.86
AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:2007046midbrain hindbrain boundary neural rod
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
1.25e4
  • 1.25e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
58.31
  • 58.31
  • 55.24
  • 52.92
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.34
  • 56.34
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.33e4
  • 1.33e4
  • 1.41e4
55.53
  • 55.53
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.25
  • 55.25
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000019Gastrula:Shield
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.36e4
  • 1.36e4
  • 1.44e4
54.60
  • 54.60
  • 51.91
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
  • 1.47e4
52.21
  • 52.21
  • 50.94
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
51.98
  • 51.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.59
  • 51.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.20
  • 50.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.51
  • 44.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.49
  • 38.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.44
  • 36.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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