D. rerio Gene: pcbd1 - ENSDARG00000031981 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031981
Namepcbd1
Descriptionpterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:ZFIN;Acc:ZDB-GENE-040426-1787]
OrganismDanio rerio (zebrafish)
Synonym(s)pcbd, zgc:73389
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
722
  • 722
  • 1.12e4
  • 1.21e4
97.59
  • 97.59
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
  • 7.54e3
94.21
  • 94.21
  • 74.77
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.74e3
  • 1.74e3
  • 2.02e3
  • 2.09e3
  • 2.45e3
  • 2.88e3
  • 3.31e3
  • 3.50e3
  • 5.19e3
  • 6.70e3
  • 7.08e3
94.18
  • 94.18
  • 93.25
  • 93.00
  • 91.81
  • 90.35
  • 88.93
  • 88.27
  • 82.62
  • 77.56
  • 76.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.80e3
  • 1.80e3
  • 2.65e3
  • 3.92e3
93.98
  • 93.98
  • 91.15
  • 86.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
2.08e3
  • 2.08e3
  • 3.38e3
  • 3.59e3
  • 3.90e3
  • 4.28e3
  • 5.23e3
93.04
  • 93.04
  • 88.68
  • 87.97
  • 86.95
  • 85.68
  • 82.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
2.57e3
  • 2.57e3
  • 2.82e3
  • 3.00e3
  • 3.29e3
  • 3.43e3
  • 3.60e3
  • 3.82e3
  • 4.00e3
  • 4.24e3
  • 4.42e3
  • 4.59e3
  • 6.58e3
  • 7.37e3
  • 7.57e3
91.39
  • 91.39
  • 90.55
  • 89.97
  • 89.00
  • 88.52
  • 87.94
  • 87.21
  • 86.61
  • 85.81
  • 85.21
  • 84.63
  • 77.97
  • 75.33
  • 74.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
2.66e3
  • 2.66e3
  • 2.95e3
  • 4.21e3
  • 4.21e3
  • 4.62e3
91.09
  • 91.09
  • 90.14
  • 85.90
  • 85.89
  • 84.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.32
  • 90.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.60
  • 89.60
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.60
  • 89.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.02
  • 89.02
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.30e3
  • 3.30e3
  • 7.79e3
88.97
  • 88.97
  • 73.91
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.77
  • 88.77
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
  • 5.08e3
87.86
  • 87.86
  • 82.99
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.19e3
  • 4.19e3
85.99
  • 85.99
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.80e3
  • 4.80e3
83.92
  • 83.92
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.18
  • 82.18
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.52e3
  • 5.52e3
81.52
  • 81.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.31
  • 80.31
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
  • 1.09e4
78.76
  • 78.76
  • 63.59
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.34
  • 75.34
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.10e3
  • 8.10e3
72.89
  • 72.89
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.45e3
  • 8.45e3
  • 9.36e3
  • 9.68e3
  • 1.31e4
71.72
  • 71.72
  • 68.68
  • 67.59
  • 56.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.77e3
  • 8.77e3
70.64
  • 70.64
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.05e3
  • 9.05e3
69.71
  • 69.71
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.70e3
  • 9.70e3
67.51
  • 67.51
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.89e3
  • 9.89e3
66.89
  • 66.89
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.05
  • 65.05
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.18e4
  • 1.20e4
64.27
  • 64.27
  • 63.32
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.21e4
61.75
  • 61.75
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.68
  • 54.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria18 species18 genesCompare expression

Orthology information comes from OMA : ENSDARG00000031981.

Cross-references

EnsemblENSDARG00000031981 (pcbd1)
ZFINZDB-GENE-040426-1787 (pcbd1)
EMBLBC059694, BX663512
Uniprot/SPTREMBLQ6PBI6, Q6PBI6_DANRE

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