D. rerio Gene: six4b - ENSDARG00000031983 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000031983
Namesix4b
DescriptionSIX homeobox 4b [Source:ZFIN;Acc:ZDB-GENE-010201-1]
OrganismDanio rerio (zebrafish)
Synonym(s)etid17314.20, six4.1, six8, wu:fj32d01

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.86
  • 85.86
AEIR
  • AEIR
UBERON:2007059neurogenic field
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
4.98e3
  • 4.98e3
  • 1.49e4
83.34
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
5.29e3
  • 5.29e3
  • 1.08e4
  • 1.21e4
  • 1.35e4
  • 1.50e4
82.28
  • 82.28
  • 63.75
  • 59.62
  • 54.71
  • 49.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007013preplacodal ectoderm
  • ZFS:0000022Gastrula:Bud
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
6.41e3
  • 6.41e3
  • 6.82e3
  • 6.89e3
  • 8.80e3
  • 9.95e3
  • 1.03e4
  • 1.16e4
  • 1.33e4
  • 1.34e4
  • 1.38e4
78.53
  • 78.53
  • 77.18
  • 76.94
  • 70.55
  • 66.70
  • 65.47
  • 61.03
  • 55.49
  • 55.18
  • 53.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.45e3
  • 6.45e3
78.41
  • 78.41
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
8.53e3
  • 8.53e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 1.08e4
71.43
  • 71.43
  • 70.57
  • 70.57
  • 69.99
  • 69.99
  • 69.43
  • 67.48
  • 66.66
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.04e3
  • 9.04e3
69.73
  • 69.73
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.08e4
  • 1.08e4
  • 1.09e4
  • 1.11e4
  • 1.15e4
  • 1.25e4
  • 1.36e4
  • 1.36e4
  • 1.47e4
  • 1.49e4
  • 1.56e4
  • 1.58e4
63.79
  • 63.79
  • 63.48
  • 62.97
  • 61.34
  • 58.20
  • 54.36
  • 54.31
  • 50.72
  • 50.19
  • 47.76
  • 46.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.88
  • 62.88
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.40
  • 62.40
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
59.88
  • 59.88
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.23e4
  • 1.23e4
  • 1.38e4
  • 1.61e4
58.92
  • 58.92
  • 53.90
  • 46.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000023Segmentation:1-4 somites
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.92
  • 55.92
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.78
  • 54.78
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.84
  • 52.84
AEIR
  • AEIR
UBERON:0009955neurogenic placode
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.59e4
  • 1.59e4
46.88
  • 46.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.76
  • 44.76
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.67e4
  • 1.67e4
  • 1.81e4
44.17
  • 44.17
  • 39.54
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.35
  • 41.35
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.77e4
  • 1.77e4
40.79
  • 40.79
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.81
  • 34.81
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.94
  • 23.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX649231
EnsemblENSDARG00000031983 (six4b)
Uniprot/SPTREMBLF1R2F4, F1R2F4_DANRE, Q5TYZ4, Q5TYZ4_DANRE
ZFINZDB-GENE-010201-1 (six4b)

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