D. rerio Gene: pafah1b1a - ENSDARG00000032013 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032013
Namepafah1b1a
Descriptionplatelet-activating factor acetylhydrolase 1b, regulatory subunit 1a [Source:ZFIN;Acc:ZDB-GENE-040116-2]
OrganismDanio rerio (zebrafish)
Synonym(s)lis1, lis1b, pafah1b1gn, q07dr1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.00e3
  • 1.00e3
96.65
  • 96.65
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.67
  • 95.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.50e3
  • 1.50e3
  • 2.45e3
  • 3.67e3
  • 4.07e3
  • 4.49e3
94.99
  • 94.99
  • 91.78
  • 87.72
  • 86.38
  • 84.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.42
  • 94.42
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.41
  • 94.41
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
  • 8.25e3
  • 8.46e3
  • 1.08e4
94.11
  • 94.11
  • 72.36
  • 71.68
  • 63.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.97e3
  • 1.97e3
  • 2.52e3
  • 3.83e3
  • 3.84e3
  • 4.05e3
  • 6.52e3
  • 7.28e3
  • 7.52e3
  • 8.06e3
  • 1.08e4
93.41
  • 93.41
  • 91.57
  • 87.19
  • 87.14
  • 86.44
  • 78.19
  • 75.64
  • 74.82
  • 73.02
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.98
  • 92.98
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.12e3
  • 2.12e3
  • 3.26e3
92.91
  • 92.91
  • 89.08
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.27e3
  • 2.27e3
  • 2.64e3
92.40
  • 92.40
  • 91.17
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.30
  • 92.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.33e3
  • 2.33e3
  • 8.15e3
92.21
  • 92.21
  • 72.70
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
2.70e3
  • 2.70e3
  • 3.85e3
  • 5.38e3
90.98
  • 90.98
  • 87.11
  • 81.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.84
  • 90.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.26
  • 90.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.26
  • 90.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.10e3
  • 3.10e3
89.64
  • 89.64
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
3.18e3
  • 3.18e3
  • 4.66e3
  • 5.69e3
  • 7.41e3
  • 7.60e3
  • 7.67e3
89.34
  • 89.34
  • 84.40
  • 80.95
  • 75.19
  • 74.55
  • 74.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.47
  • 88.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.50
  • 87.50
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.74e3
  • 3.74e3
87.47
  • 87.47
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.94e3
  • 3.94e3
86.80
  • 86.80
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.77
  • 86.77
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.98e3
  • 6.22e3
  • 6.40e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.22e3
  • 8.30e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 84.61
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 79.99
  • 79.16
  • 78.57
  • 76.66
  • 76.46
  • 76.46
  • 76.18
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 72.48
  • 72.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.36e3
  • 4.36e3
85.39
  • 85.39
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
4.45e3
  • 4.45e3
  • 4.67e3
  • 4.77e3
  • 5.69e3
  • 6.18e3
  • 6.55e3
  • 6.64e3
  • 6.76e3
  • 7.27e3
  • 7.77e3
  • 7.82e3
  • 8.30e3
  • 8.54e3
  • 8.87e3
  • 1.03e4
85.09
  • 85.09
  • 84.37
  • 84.04
  • 80.95
  • 79.32
  • 78.08
  • 77.77
  • 77.38
  • 75.65
  • 73.98
  • 73.81
  • 72.22
  • 71.39
  • 70.32
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.28e3
  • 6.28e3
78.98
  • 78.98
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.72e3
  • 7.72e3
74.15
  • 74.15
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.91e3
  • 7.91e3
  • 9.41e3
73.53
  • 73.53
  • 68.51
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.19e3
  • 8.19e3
72.59
  • 72.59
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.81e3
  • 8.81e3
70.51
  • 70.51
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.15e3
  • 9.15e3
69.37
  • 69.37
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
1.05e4
  • 1.05e4
  • 1.28e4
  • 1.28e4
  • 1.49e4
64.99
  • 64.99
  • 57.13
  • 57.11
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.19e4
62.50
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
  • 1.34e4
  • 1.49e4
  • 1.49e4
59.99
  • 59.99
  • 54.97
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.49e4
56.24
  • 56.24
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
  • 1.49e4
54.15
  • 54.15
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000204ventral part of telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
  • 49.99
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC053205, BC164856, BX324162, DQ141217
EnsemblENSDARG00000032013 (pafah1b1a)
Uniprot/SPTREMBLB2GQS8, B2GQS8_DANRE
Uniprot/SWISSPROTLIS1A_DANRE, Q7T394
ZFINZDB-GENE-040116-2 (pafah1b1a)

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