D. rerio Gene: puf60a - ENSDARG00000032175 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032175
Namepuf60a
Descriptionpoly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
OrganismDanio rerio (zebrafish)
Synonym(s)fc21a05, wu:fc21a05, wu:fi43a08
Orthologs(s)7 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
528
  • 528
  • 625
  • 1.71e3
  • 3.47e3
  • 4.61e3
98.24
  • 98.24
  • 97.91
  • 94.29
  • 88.38
  • 84.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
635
  • 635
  • 773
  • 795
  • 1.11e3
  • 1.12e3
  • 1.80e3
97.88
  • 97.88
  • 97.41
  • 97.34
  • 96.29
  • 96.24
  • 93.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
779
  • 779
  • 1.10e3
  • 1.23e3
  • 1.24e3
  • 1.70e3
  • 1.86e3
  • 1.89e3
  • 1.99e3
  • 2.71e3
  • 4.28e3
97.39
  • 97.39
  • 96.31
  • 95.90
  • 95.85
  • 94.32
  • 93.77
  • 93.69
  • 93.35
  • 90.93
  • 85.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.03e3
  • 1.03e3
96.56
  • 96.56
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.05e3
  • 1.05e3
96.48
  • 96.48
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.06e3
  • 1.06e3
  • 1.50e4
96.46
  • 96.46
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.22e3
  • 1.22e3
  • 2.93e3
95.92
  • 95.92
  • 90.19
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.30e3
  • 1.30e3
95.64
  • 95.64
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 2.64e3
95.21
  • 95.21
  • 91.16
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.19
  • 95.19
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.04
  • 95.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.72
  • 94.72
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
  • 2.58e3
  • 3.56e3
  • 6.09e3
94.72
  • 94.72
  • 91.37
  • 88.09
  • 79.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.62
  • 94.62
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.58
  • 94.58
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
1.68e3
  • 1.68e3
  • 1.75e3
  • 1.78e3
  • 1.92e3
  • 2.20e3
  • 2.43e3
  • 2.76e3
  • 3.13e3
  • 3.58e3
  • 4.16e3
  • 4.54e3
  • 4.57e3
  • 4.63e3
  • 4.79e3
  • 1.28e4
  • 1.44e4
  • 1.45e4
  • 1.49e4
94.37
  • 94.37
  • 94.13
  • 94.03
  • 93.58
  • 92.65
  • 91.88
  • 90.76
  • 89.52
  • 88.02
  • 86.06
  • 84.79
  • 84.70
  • 84.52
  • 83.98
  • 57.23
  • 51.88
  • 51.42
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.96
  • 93.96
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
93.69
  • 93.69
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.97e3
  • 1.97e3
93.41
  • 93.41
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.37
  • 93.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
93.29
  • 93.29
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.04e3
  • 2.04e3
93.17
  • 93.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.77
  • 92.77
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.22
  • 92.22
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.11
  • 92.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
2.56e3
  • 2.56e3
  • 2.82e3
  • 9.51e3
  • 1.22e4
  • 1.49e4
91.44
  • 91.44
  • 90.57
  • 68.17
  • 59.08
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.88e3
  • 2.88e3
  • 3.16e3
  • 6.07e3
90.37
  • 90.37
  • 89.43
  • 79.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.04
  • 89.04
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.43e3
  • 3.43e3
88.50
  • 88.50
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.36
  • 88.36
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.90e3
  • 3.90e3
86.94
  • 86.94
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.33e3
  • 4.33e3
  • 5.52e3
85.50
  • 85.50
  • 81.51
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.59
  • 74.59
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
1.02e4
  • 1.02e4
65.77
  • 65.77
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.75
  • 61.75
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
60.84
  • 60.84
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000031Pharyngula:Prim-25
1.22e4
  • 1.22e4
59.06
  • 59.06
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.46e4
55.16
  • 55.16
  • 51.26
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000032175.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000032175.

Cross-references

EnsemblENSDARG00000032175 (puf60a)
ZFINZDB-GENE-030131-2891 (puf60a)
EMBLBX323559
Uniprot/SPTREMBLB0S627, B0S627_DANRE, E7FE61, E7FE61_DANRE, F1QB76, F1QB76_DANRE, F1QZ57, F1QZ57_DANRE, F6NPA6, F6NPA6_DANRE, F6NQ93, F6NQ93_DANRE, F6NTM3, F6NTM3_DANRE, F6P3Y7, F6P3Y7_DANRE

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