D. rerio Gene: lrrc8aa - ENSDARG00000032188 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032188
Namelrrc8aa
Descriptionleucine rich repeat containing 8 family, member Aa [Source:ZFIN;Acc:ZDB-GENE-030131-5853]
OrganismDanio rerio (zebrafish)
Synonym(s)f1qwy7, lrrc8a, wu:fb18g12, wu:fi21b10

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
1.38e3
  • 1.38e3
  • 1.65e3
  • 4.49e3
  • 4.71e3
  • 4.76e3
95.37
  • 95.37
  • 94.49
  • 84.98
  • 84.22
  • 84.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.56e3
  • 1.56e3
  • 2.11e3
  • 2.53e3
  • 3.26e3
  • 4.27e3
  • 4.52e3
  • 6.36e3
  • 6.59e3
  • 8.70e3
  • 9.57e3
  • 9.76e3
  • 1.04e4
  • 1.11e4
  • 1.24e4
  • 1.25e4
  • 1.46e4
  • 1.47e4
  • 1.50e4
94.77
  • 94.77
  • 92.95
  • 91.54
  • 89.10
  • 85.71
  • 84.86
  • 78.70
  • 77.93
  • 70.86
  • 67.96
  • 67.32
  • 65.16
  • 62.83
  • 58.37
  • 57.98
  • 51.12
  • 50.90
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.92e3
  • 1.92e3
  • 2.51e3
  • 4.78e3
  • 5.63e3
  • 6.65e3
  • 8.11e3
93.58
  • 93.58
  • 91.59
  • 83.99
  • 81.14
  • 77.75
  • 72.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.09e3
  • 2.09e3
93.00
  • 93.00
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.31e3
  • 3.31e3
88.93
  • 88.93
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.14e3
  • 4.14e3
86.14
  • 86.14
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.82
  • 85.82
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.24e3
  • 4.24e3
85.81
  • 85.81
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.48e3
  • 4.48e3
85.01
  • 85.01
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
84.00
  • 84.00
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
  • 7.21e3
80.14
  • 80.14
  • 75.85
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.23
  • 78.23
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.88
  • 76.88
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.21e3
  • 7.21e3
75.84
  • 75.84
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.39e3
  • 7.39e3
75.24
  • 75.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 8.75e3
74.98
  • 74.98
  • 70.69
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
7.48e3
  • 7.48e3
  • 7.69e3
  • 9.29e3
  • 9.43e3
  • 9.79e3
  • 1.04e4
  • 1.04e4
  • 1.05e4
  • 1.59e4
74.94
  • 74.94
  • 74.24
  • 68.90
  • 68.43
  • 67.23
  • 65.19
  • 65.01
  • 64.85
  • 46.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.84
  • 74.84
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.35
  • 74.35
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.04
  • 74.04
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.76e3
  • 7.76e3
  • 1.02e4
74.02
  • 74.02
  • 65.74
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.41
  • 72.41
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.51e3
  • 8.51e3
71.52
  • 71.52
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.70
  • 69.70
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.17
  • 67.17
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.91e4
65.11
  • 65.11
  • 36.05
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.52
  • 62.52
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.69
  • 59.69
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.21e4
  • 1.21e4
  • 1.27e4
  • 1.57e4
59.53
  • 59.53
  • 57.53
  • 47.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
  • 1.40e4
53.62
  • 53.62
  • 52.96
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCT027677, CU571253
EnsemblENSDARG00000032188 (lrrc8aa)
Uniprot/SPTREMBLE9QIH3, E9QIH3_DANRE
ZFINZDB-GENE-030131-5853 (lrrc8aa)

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