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D. rerio Gene: tmtopsb - ENSDARG00000032246 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032246
Nametmtopsb
Descriptionteleost multiple tissue opsin b [Source:ZFIN;Acc:ZDB-GENE-091118-50]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-174k6.1, tmt-opsin 1b, tmt3b
Orthologs(s)1 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
9.10e3
  • 9.10e3
  • 1.50e4
69.53
  • 69.53
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
  • 1.46e4
62.54
  • 62.54
  • 51.19
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.80
  • 61.80
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.27e4
  • 1.27e4
57.63
  • 57.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.30e4
  • 1.30e4
56.49
  • 56.49
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
  • 1.36e4
55.53
  • 55.53
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.34e4
  • 1.34e4
55.20
  • 55.20
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.00
  • 55.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
  • 2.23e4
50.72
  • 50.72
  • 25.23
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.68
  • 45.68
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.44
  • 44.44
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.50
  • 43.50
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.79e4
  • 1.79e4
  • 1.95e4
  • 2.15e4
40.08
  • 40.08
  • 34.65
  • 28.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.89e4
  • 1.89e4
  • 1.98e4
36.81
  • 36.81
  • 33.60
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.33
  • 33.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000032246.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Bilateria11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000032246.

Cross-references

EnsemblENSDARG00000032246 (tmtopsb)
ZFINZDB-GENE-091118-50 (tmtopsb)
EMBLCR352209, CU302291
Uniprot/SPTREMBLE7F1P3, E7F1P3_DANRE, F1R929, F1R929_DANRE

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