D. rerio Gene: txndc16 - ENSDARG00000032256 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032256
Nametxndc16
Descriptionthioredoxin domain containing 16 [Source:ZFIN;Acc:ZDB-GENE-100712-1]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-84m6.4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
68.00
  • 68.00
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.05
  • 66.05
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.06e4
  • 1.06e4
64.54
  • 64.54
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.10e4
  • 1.10e4
63.18
  • 63.18
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.11
  • 63.11
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.10e4
  • 1.10e4
63.10
  • 63.10
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.44
  • 61.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.27
  • 61.27
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.18e4
  • 1.18e4
  • 1.22e4
  • 1.34e4
  • 1.38e4
  • 1.47e4
60.57
  • 60.57
  • 59.11
  • 55.02
  • 53.89
  • 50.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.20e4
  • 1.20e4
  • 1.62e4
59.91
  • 59.91
  • 45.70
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.28e4
57.66
  • 57.66
  • 57.05
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.27e4
  • 1.27e4
  • 1.63e4
57.34
  • 57.34
  • 45.30
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.21
  • 54.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.82
  • 53.82
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.38e4
  • 1.38e4
  • 1.64e4
53.74
  • 53.74
  • 45.06
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.67
  • 53.67
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.64
  • 53.64
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.36
  • 53.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.32
  • 53.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.24
  • 51.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.69
  • 47.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.36
  • 45.36
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.47
  • 44.47
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.51
  • 40.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCR387921
EnsemblENSDARG00000032256 (txndc16)
Uniprot/SPTREMBLE7FC06, E7FC06_DANRE, X1WDB3, X1WDB3_DANRE
ZFINZDB-GENE-100712-1 (txndc16)

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