D. rerio Gene: clcn6 - ENSDARG00000032577 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032577
Nameclcn6
Descriptionchloride channel 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2056]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb95f01

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.93
  • 92.93
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.16e3
  • 3.16e3
89.41
  • 89.41
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
5.42e3
  • 5.42e3
  • 9.72e3
81.86
  • 81.86
  • 67.45
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.50
  • 81.50
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.70e3
  • 5.70e3
80.92
  • 80.92
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.45e3
  • 8.45e3
71.69
  • 71.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.13
  • 66.13
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.11e4
  • 1.11e4
62.72
  • 62.72
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.26
  • 61.26
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.21e4
  • 1.21e4
  • 1.27e4
  • 1.36e4
  • 1.39e4
  • 1.40e4
59.60
  • 59.60
  • 57.31
  • 54.49
  • 53.56
  • 53.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.24e4
  • 1.24e4
  • 1.46e4
58.33
  • 58.33
  • 51.10
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.25e4
  • 1.25e4
  • 1.46e4
58.26
  • 58.26
  • 51.25
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.24
  • 57.24
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.82
  • 56.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.55
  • 56.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.67
  • 55.67
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.33e4
  • 1.33e4
  • 1.53e4
55.56
  • 55.56
  • 48.73
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.01
  • 55.01
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.84
  • 52.84
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.23
  • 52.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.44
  • 51.44
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.91
  • 48.91
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.10
  • 48.10
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.85
  • 47.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX323876
EnsemblENSDARG00000032577 (clcn6)
Uniprot/SPTREMBLE7F798, E7F798_DANRE
ZFINZDB-GENE-030131-2056 (clcn6)

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