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D. rerio Gene: pax2b - ENSDARG00000032578 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032578
Namepax2b
Descriptionpaired box 2b [Source:ZFIN;Acc:ZDB-GENE-001030-4]
OrganismDanio rerio (zebrafish)
Synonym(s)pax2.2
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
1.12e4
  • 1.12e4
  • 1.22e4
  • 1.61e4
  • 1.62e4
  • 1.67e4
  • 1.73e4
  • 1.75e4
  • 1.78e4
  • 1.81e4
62.56
  • 62.56
  • 59.11
  • 46.03
  • 45.60
  • 44.24
  • 42.21
  • 41.29
  • 40.40
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.14e4
  • 1.14e4
  • 1.23e4
61.88
  • 61.88
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:2007046midbrain hindbrain boundary neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:2007045midbrain hindbrain boundary neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
  • 1.49e4
58.32
  • 58.32
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
1.27e4
  • 1.27e4
  • 1.30e4
57.47
  • 57.47
  • 56.49
AEIR
  • AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000027Segmentation:20-25 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000023Segmentation:1-4 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
1.47e4
  • 1.47e4
  • 1.47e4
  • 1.50e4
  • 1.63e4
  • 1.77e4
  • 1.78e4
  • 1.83e4
50.81
  • 50.81
  • 50.81
  • 49.69
  • 45.45
  • 40.62
  • 40.38
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.62e4
  • 1.62e4
45.66
  • 45.66
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
  • 1.85e4
45.22
  • 45.22
  • 38.10
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.69e4
  • 1.69e4
  • 1.74e4
  • 2.07e4
43.43
  • 43.43
  • 41.59
  • 30.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.69e4
  • 1.69e4
43.37
  • 43.37
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.70
  • 31.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.55
  • 30.55
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.20
  • 22.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000032578.

Cross-references

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