D. rerio Gene: foxg1b - ENSDARG00000032705 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032705
Namefoxg1b
Descriptionforkhead box G1b [Source:ZFIN;Acc:ZDB-GENE-040426-2437]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:85969
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
260
  • 260
  • 483
  • 599
  • 1.49e3
99.13
  • 99.13
  • 98.39
  • 98.00
  • 95.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
868
  • 868
  • 5.68e3
97.10
  • 97.10
  • 80.97
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
1.64e3
  • 1.64e3
  • 4.64e3
  • 4.99e3
  • 6.84e3
  • 1.03e4
  • 1.28e4
  • 1.35e4
  • 1.47e4
  • 1.50e4
  • 1.55e4
  • 1.56e4
  • 1.56e4
  • 1.58e4
94.52
  • 94.52
  • 84.45
  • 83.29
  • 77.11
  • 65.59
  • 57.29
  • 54.82
  • 50.68
  • 49.92
  • 48.09
  • 47.89
  • 47.66
  • 47.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.16e3
  • 3.16e3
  • 4.25e3
  • 4.99e3
89.43
  • 89.43
  • 85.76
  • 83.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
3.85e3
  • 3.85e3
  • 4.67e3
  • 6.46e3
  • 1.24e4
  • 1.45e4
  • 1.49e4
  • 1.53e4
  • 1.54e4
87.13
  • 87.13
  • 84.38
  • 78.37
  • 58.52
  • 51.43
  • 49.97
  • 48.75
  • 48.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
  • 1.17e4
74.37
  • 74.37
  • 60.76
AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.07e4
66.67
  • 66.67
  • 64.28
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.93
  • 57.93
AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.09
  • 53.09
AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.85
  • 48.85
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.55e4
  • 1.55e4
  • 1.75e4
48.16
  • 48.16
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.70
  • 32.70
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.01
  • 32.01
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.36e4
  • 2.36e4
21.13
  • 21.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000032705.

Cross-references

EnsemblENSDARG00000032705 (foxg1b)
ZFINZDB-GENE-040426-2437 (foxg1b)
Uniprot/SPTREMBLQ6NW50, Q6NW50_DANRE

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