D. rerio Gene: pacsin1a - ENSDARG00000032865 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032865
Namepacsin1a
Descriptionprotein kinase C and casein kinase substrate in neurons 1a [Source:ZFIN;Acc:ZDB-GENE-050522-155]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:109968

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
297
  • 297
  • 1.02e4
  • 1.05e4
99.01
  • 99.01
  • 65.89
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.66e3
  • 1.66e3
  • 4.41e3
94.45
  • 94.45
  • 85.23
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.92e3
  • 1.92e3
  • 2.80e3
  • 9.64e3
  • 1.49e4
  • 1.57e4
93.59
  • 93.59
  • 90.63
  • 67.74
  • 49.97
  • 47.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
2.17e3
  • 2.17e3
  • 7.47e3
  • 8.15e3
92.72
  • 92.72
  • 75.00
  • 72.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.12e3
  • 5.12e3
  • 1.17e4
82.86
  • 82.86
  • 60.88
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
5.77e3
  • 5.77e3
  • 1.30e4
80.67
  • 80.67
  • 56.38
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
8.54e3
  • 8.54e3
  • 8.65e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
71.42
  • 71.42
  • 71.04
  • 70.57
  • 70.57
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.54e3
  • 8.54e3
  • 8.54e3
  • 9.96e3
  • 1.07e4
71.42
  • 71.42
  • 71.42
  • 66.66
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.34e3
  • 9.34e3
  • 9.44e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
69.99
  • 69.99
  • 68.74
  • 68.74
  • 68.40
  • 66.65
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.34e3
  • 9.34e3
  • 9.34e3
  • 1.05e4
  • 1.05e4
  • 1.09e4
68.74
  • 68.74
  • 68.74
  • 64.98
  • 64.98
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.69e3
  • 9.69e3
67.56
  • 67.56
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.61
  • 55.61
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.95
  • 51.95
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.61e4
  • 1.61e4
46.17
  • 46.17
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.74e4
  • 1.74e4
  • 1.96e4
41.77
  • 41.77
  • 34.31
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.74e4
  • 1.74e4
41.65
  • 41.65
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.75e4
  • 1.75e4
41.27
  • 41.27
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.15
  • 39.15
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.91e4
  • 1.91e4
35.91
  • 35.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.06
  • 33.06
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.97
  • 32.97
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.34
  • 31.34
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.34
  • 28.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.47
  • 27.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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