D. rerio Gene: chchd3a - ENSDARG00000032919 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032919
Namechchd3a
Descriptioncoiled-coil-helix-coiled-coil-helix domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-5005]
OrganismDanio rerio (zebrafish)
Synonym(s)chchd3, e7ffw8, flj20420, plxna4, si:rp71-18a24.1, wu:fe23h05, zgc:111837

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
612
  • 612
97.95
  • 97.95
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
700
  • 700
  • 1.82e3
  • 4.22e3
  • 4.80e3
97.66
  • 97.66
  • 93.90
  • 85.87
  • 83.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
743
  • 743
  • 2.24e3
97.52
  • 97.52
  • 92.52
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
913
  • 913
96.95
  • 96.95
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
928
  • 928
96.90
  • 96.90
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.62
  • 95.62
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.53
  • 95.53
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.46e3
  • 1.46e3
  • 2.21e3
  • 2.37e3
  • 2.66e3
  • 2.99e3
  • 3.20e3
  • 3.44e3
  • 3.94e3
  • 4.70e3
  • 5.09e3
  • 6.19e3
  • 8.88e3
  • 1.09e4
  • 1.13e4
  • 1.46e4
  • 1.47e4
95.13
  • 95.13
  • 92.60
  • 92.07
  • 91.09
  • 89.98
  • 89.30
  • 88.47
  • 86.82
  • 84.25
  • 82.95
  • 79.29
  • 70.26
  • 63.46
  • 62.03
  • 51.01
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.93e3
  • 1.93e3
  • 2.50e3
  • 2.60e3
93.55
  • 93.55
  • 91.62
  • 91.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
2.43e3
  • 2.43e3
  • 2.52e3
  • 2.62e3
  • 3.74e3
  • 4.48e3
  • 4.55e3
  • 5.25e3
  • 1.00e4
  • 1.16e4
  • 1.22e4
91.87
  • 91.87
  • 91.57
  • 91.24
  • 87.48
  • 85.01
  • 84.75
  • 82.43
  • 66.52
  • 61.26
  • 59.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.48e3
  • 2.48e3
  • 1.50e4
91.68
  • 91.68
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.76e3
  • 2.76e3
90.76
  • 90.76
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
2.83e3
  • 2.83e3
  • 3.16e3
  • 3.86e3
  • 3.95e3
  • 7.15e3
  • 7.37e3
90.53
  • 90.53
  • 89.41
  • 87.07
  • 86.78
  • 76.08
  • 75.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.49e3
  • 3.49e3
  • 3.60e3
  • 5.58e3
  • 5.60e3
  • 6.24e3
88.32
  • 88.32
  • 87.94
  • 81.31
  • 81.26
  • 79.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.56e3
  • 3.56e3
  • 4.23e3
88.07
  • 88.07
  • 85.85
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.82
  • 86.82
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.13e3
  • 5.13e3
82.82
  • 82.82
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.71e3
  • 5.71e3
  • 6.60e3
  • 1.49e4
80.89
  • 80.89
  • 77.89
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.85e3
  • 6.85e3
77.07
  • 77.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
76.06
  • 76.06
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.10e3
  • 9.10e3
69.54
  • 69.54
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.12e3
  • 9.12e3
69.48
  • 69.48
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.59
  • 65.59
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.55
  • 65.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.57
  • 63.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.65
  • 60.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.22
  • 54.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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