D. rerio Gene: her12 - ENSDARG00000032963 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032963
Nameher12
Descriptionhairy-related 12 [Source:ZFIN;Acc:ZDB-GENE-040824-5]
OrganismDanio rerio (zebrafish)
Synonym(s)hes5c

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.07e3
  • 1.07e3
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.15e3
  • 1.15e3
  • 1.24e3
  • 4.07e3
  • 4.48e3
  • 4.48e3
96.16
  • 96.16
  • 95.84
  • 86.36
  • 85.00
  • 85.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.15e3
  • 1.15e3
96.16
  • 96.16
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.58e3
  • 1.58e3
  • 9.46e3
94.71
  • 94.71
  • 68.34
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.01e3
  • 2.01e3
  • 2.60e3
  • 2.88e3
  • 5.66e3
  • 9.78e3
93.27
  • 93.27
  • 91.31
  • 90.37
  • 81.03
  • 67.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.15e3
  • 3.15e3
  • 5.50e3
  • 5.81e3
  • 6.85e3
89.47
  • 89.47
  • 81.57
  • 80.55
  • 77.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.40e3
  • 3.40e3
  • 3.74e3
  • 9.96e3
  • 1.04e4
88.63
  • 88.63
  • 87.49
  • 66.65
  • 65.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
3.56e3
  • 3.56e3
  • 3.98e3
  • 4.27e3
  • 5.60e3
  • 5.81e3
  • 7.47e3
88.09
  • 88.09
  • 86.66
  • 85.71
  • 81.24
  • 80.55
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
3.58e3
  • 3.58e3
  • 1.31e4
88.02
  • 88.02
  • 56.11
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.93e3
  • 3.93e3
  • 4.39e3
86.84
  • 86.84
  • 85.29
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.98e3
  • 3.98e3
  • 4.27e3
86.66
  • 86.66
  • 85.71
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
4.48e3
  • 4.48e3
  • 4.48e3
  • 5.50e3
  • 1.30e4
84.99
  • 84.99
  • 84.99
  • 81.57
  • 56.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
  • 5.75e3
  • 5.75e3
83.33
  • 83.33
  • 80.76
  • 80.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
5.27e3
  • 5.27e3
  • 5.27e3
  • 5.50e3
  • 9.60e3
  • 9.96e3
  • 9.96e3
82.35
  • 82.35
  • 82.35
  • 81.57
  • 67.85
  • 66.67
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
5.50e3
  • 5.50e3
  • 7.47e3
  • 8.30e3
  • 9.13e3
81.57
  • 81.57
  • 74.99
  • 72.21
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
  • 2.27e4
80.95
  • 80.95
  • 24.12
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
6.70e3
  • 6.70e3
77.57
  • 77.57
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
7.08e3
  • 7.08e3
  • 7.15e3
  • 7.47e3
76.30
  • 76.30
  • 76.07
  • 74.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003064intermediate mesoderm
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000068proneural cluster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.96e3
75.00
  • 75.00
  • 75.00
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
8.04e3
  • 8.04e3
  • 8.54e3
  • 8.71e3
73.07
  • 73.07
  • 71.42
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
8.65e3
  • 8.65e3
  • 8.65e3
  • 9.25e3
71.04
  • 71.04
  • 71.04
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000022Gastrula:Bud
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.12e4
  • 1.12e4
  • 1.33e4
  • 1.35e4
  • 1.36e4
62.47
  • 62.47
  • 55.53
  • 54.73
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.18e4
  • 1.18e4
  • 1.26e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.31e4
60.50
  • 60.50
  • 57.87
  • 57.13
  • 56.65
  • 56.65
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.65e4
  • 1.65e4
44.78
  • 44.78
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.72e4
  • 1.72e4
42.56
  • 42.56
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.19
  • 36.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.70
  • 32.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.98
  • 30.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.34e4
  • 2.34e4
21.58
  • 21.58
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.54e4
  • 2.54e4
14.95
  • 14.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAY426713, CU062502
EnsemblENSDARG00000032963 (her12)
Uniprot/SPTREMBLQ6TA36, Q6TA36_DANRE
ZFINZDB-GENE-040824-5 (her12)

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