D. rerio Gene: cox4i1 - ENSDARG00000032970 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000032970
Namecox4i1
Descriptioncytochrome c oxidase subunit IV isoform 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
OrganismDanio rerio (zebrafish)
Synonym(s)cox4-1, cox4i1, mg:bb02d03, zgc:110058

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
41.1
  • 41.1
  • 1.15e4
  • 1.20e4
99.87
  • 99.87
  • 61.34
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
68.0
  • 68.0
99.78
  • 99.78
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
156
  • 156
99.48
  • 99.48
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
171
  • 171
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
177
  • 177
  • 193
99.41
  • 99.41
  • 99.36
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
181
  • 181
99.40
  • 99.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
192
  • 192
99.36
  • 99.36
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
201
  • 201
99.33
  • 99.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
202
  • 202
  • 208
  • 229
  • 238
  • 300
99.33
  • 99.33
  • 99.31
  • 99.24
  • 99.21
  • 99.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
228
  • 228
99.24
  • 99.24
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
230
  • 230
  • 231
99.23
  • 99.23
  • 99.23
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
240
  • 240
99.20
  • 99.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
250
  • 250
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
256
  • 256
99.15
  • 99.15
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
260
  • 260
99.13
  • 99.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
278
  • 278
  • 1.12e4
  • 1.21e4
99.07
  • 99.07
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
293
  • 293
  • 609
99.02
  • 99.02
  • 97.96
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
303
  • 303
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
364
  • 364
98.78
  • 98.78
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
410
  • 410
98.63
  • 98.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.13e3
  • 1.13e3
  • 1.39e3
96.21
  • 96.21
  • 95.34
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.19e3
  • 1.19e3
96.01
  • 96.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
93.80
  • 93.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.55e3
  • 2.55e3
  • 4.41e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
91.46
  • 91.46
  • 85.22
  • 83.33
  • 78.12
  • 77.77
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.46
  • 76.46
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.67e3
  • 2.67e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
88.45
  • 88.45
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
64.99
  • 64.99
  • 61.09
  • 60.50
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.07e4
  • 1.07e4
  • 1.10e4
64.27
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.08e4
  • 1.08e4
  • 1.14e4
  • 1.16e4
63.87
  • 63.87
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.09e4
  • 1.09e4
  • 1.12e4
63.63
  • 63.63
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.09e4
  • 1.09e4
  • 1.16e4
63.63
  • 63.63
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
  • 1.18e4
  • 1.18e4
61.34
  • 61.34
  • 60.39
  • 60.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
60.50
  • 60.50
  • 59.50
  • 58.80
  • 58.31
  • 58.31
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
60.50
  • 60.50
  • 59.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAY391417, BX548023
EnsemblENSDARG00000032970 (cox4i1)
Uniprot/SPTREMBLQ6TNV0, Q6TNV0_DANRE
ZFINZDB-GENE-030131-5175 (cox4i1)

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