D. rerio Gene: h3f3b.1 - ENSDARG00000033009 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033009
Nameh3f3b.1
DescriptionH3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
OrganismDanio rerio (zebrafish)
Synonym(s)a5pl96, fj58b09, h3f3c, q7zv67, wu:fa25h06, wu:fa96g06, wu:fb07a08, wu:fb36f01, wu:fj58b09, zgc:110292, zgc:174300, zgc:64222

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
32.3
  • 32.3
  • 379
  • 867
  • 1.18e3
99.90
  • 99.90
  • 98.73
  • 97.10
  • 96.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
148
  • 148
  • 1.47e4
99.51
  • 99.51
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
191
  • 191
99.36
  • 99.36
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
208
  • 208
  • 269
  • 303
  • 326
  • 352
  • 467
  • 805
  • 909
  • 940
  • 964
99.31
  • 99.31
  • 99.10
  • 98.99
  • 98.91
  • 98.82
  • 98.44
  • 97.31
  • 96.96
  • 96.85
  • 96.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
234
  • 234
  • 1.12e3
  • 1.21e4
99.22
  • 99.22
  • 96.27
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
372
  • 372
  • 383
  • 520
98.76
  • 98.76
  • 98.72
  • 98.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
378
  • 378
  • 468
  • 1.37e4
98.74
  • 98.74
  • 98.44
  • 54.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
410
  • 410
  • 415
  • 436
  • 516
  • 535
  • 762
  • 774
  • 836
  • 1.01e3
  • 1.24e3
  • 1.36e3
  • 1.52e3
  • 2.03e3
  • 3.63e3
  • 6.80e3
  • 1.38e4
  • 1.41e4
  • 1.49e4
98.63
  • 98.63
  • 98.62
  • 98.54
  • 98.28
  • 98.21
  • 97.45
  • 97.41
  • 97.21
  • 96.64
  • 95.84
  • 95.44
  • 94.91
  • 93.22
  • 87.86
  • 77.23
  • 53.74
  • 52.86
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
417
  • 417
98.61
  • 98.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
504
  • 504
98.32
  • 98.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
552
  • 552
98.15
  • 98.15
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
557
  • 557
  • 671
98.14
  • 98.14
  • 97.76
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
566
  • 566
  • 883
  • 1.48e3
  • 1.70e3
  • 1.88e3
  • 3.68e3
98.11
  • 98.11
  • 97.05
  • 95.04
  • 94.32
  • 93.70
  • 87.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
579
  • 579
98.06
  • 98.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
685
  • 685
97.71
  • 97.71
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
804
  • 804
97.31
  • 97.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
836
  • 836
97.20
  • 97.20
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
879
  • 879
97.06
  • 97.06
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
971
  • 971
96.75
  • 96.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.62
  • 96.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.22e3
  • 1.22e3
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.26e3
  • 1.26e3
95.80
  • 95.80
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.51
  • 95.51
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.32
  • 95.32
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.59e3
  • 1.59e3
  • 3.90e3
  • 5.32e3
  • 8.08e3
  • 8.17e3
94.67
  • 94.67
  • 86.94
  • 82.18
  • 72.95
  • 72.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.22
  • 94.22
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.14e3
  • 2.14e3
92.85
  • 92.85
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.95e3
  • 4.95e3
83.41
  • 83.41
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.34e3
  • 5.34e3
  • 1.50e4
82.12
  • 82.12
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
81.27
  • 81.27
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.72e3
  • 6.72e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
  • 1.46e4
72.31
  • 72.31
  • 51.26
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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