D. rerio Gene: nr1d1 - ENSDARG00000033160 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033160
Namenr1d1
Descriptionnuclear receptor subfamily 1, group d, member 1 [Source:ZFIN;Acc:ZDB-GENE-050105-1]
OrganismDanio rerio (zebrafish)
Synonym(s)ear1, eip75b, reverbalpha

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
268
  • 268
  • 6.97e3
  • 1.02e4
  • 1.12e4
  • 1.12e4
  • 1.20e4
99.11
  • 99.11
  • 76.66
  • 65.89
  • 62.50
  • 62.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
91.99
  • 91.99
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
2.42e3
  • 2.42e3
91.91
  • 91.91
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
  • 7.39e3
91.74
  • 91.74
  • 75.27
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.76e3
  • 2.76e3
90.76
  • 90.76
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.99e3
  • 2.99e3
  • 6.78e3
90.00
  • 90.00
  • 77.31
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.27e3
  • 3.27e3
  • 2.36e4
89.06
  • 89.06
  • 20.86
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.61e3
  • 3.61e3
87.91
  • 87.91
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
3.63e3
  • 3.63e3
  • 2.05e4
  • 2.21e4
  • 2.23e4
87.86
  • 87.86
  • 31.20
  • 25.85
  • 25.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.07e3
  • 4.07e3
  • 7.09e3
  • 7.47e3
86.36
  • 86.36
  • 76.26
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.27e3
  • 4.27e3
  • 8.53e3
85.71
  • 85.71
  • 71.43
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.08
  • 85.08
AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 1.49e4
83.34
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.85
  • 82.85
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.53
  • 78.53
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.64e3
  • 6.64e3
  • 9.51e3
77.77
  • 77.77
  • 68.17
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.66e3
  • 6.66e3
77.69
  • 77.69
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
7.08e3
  • 7.08e3
  • 8.53e3
  • 1.49e4
76.30
  • 76.30
  • 71.43
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
8.96e3
  • 8.96e3
  • 9.96e3
69.99
  • 69.99
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.38
  • 66.38
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
1.02e4
  • 1.02e4
  • 1.12e4
  • 1.23e4
65.77
  • 65.77
  • 62.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.69
  • 65.69
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.05e4
  • 1.05e4
  • 1.26e4
64.98
  • 64.98
  • 57.87
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.72
  • 64.72
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.46e4
55.16
  • 55.16
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.00
  • 49.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.81
  • 46.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.68
  • 43.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX682558
EnsemblENSDARG00000033160 (nr1d1)
Uniprot/SPTREMBLF1QR88, F1QR88_DANRE, F1RAU6, F1RAU6_DANRE
ZFINZDB-GENE-050105-1 (nr1d1)

Do not show this banner again