D. rerio Gene: stmn2a - ENSDARG00000033234 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033234
Namestmn2a
Descriptionstathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
OrganismDanio rerio (zebrafish)
Synonym(s)scg10b, zgc:92905

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
222
  • 222
  • 5.37e3
  • 9.55e3
  • 9.96e3
  • 1.22e4
  • 1.36e4
99.26
  • 99.26
  • 82.02
  • 68.02
  • 66.67
  • 59.08
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
433
  • 433
  • 995
98.55
  • 98.55
  • 96.67
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
729
  • 729
  • 826
  • 3.17e3
  • 4.42e3
  • 4.60e3
  • 5.10e3
  • 6.40e3
  • 1.49e4
  • 1.56e4
97.56
  • 97.56
  • 97.24
  • 89.38
  • 85.22
  • 84.61
  • 82.92
  • 78.58
  • 50.22
  • 47.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
762
  • 762
  • 1.35e3
  • 2.02e3
  • 2.50e3
  • 3.30e3
  • 5.75e3
  • 7.20e3
  • 8.95e3
  • 1.03e4
  • 1.14e4
  • 1.25e4
  • 1.35e4
  • 1.50e4
  • 1.50e4
97.45
  • 97.45
  • 95.49
  • 93.24
  • 91.62
  • 88.96
  • 80.74
  • 75.88
  • 70.04
  • 65.61
  • 61.75
  • 58.12
  • 54.65
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
906
  • 906
96.97
  • 96.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.16e3
  • 1.16e3
  • 1.28e3
  • 1.51e3
96.11
  • 96.11
  • 95.73
  • 94.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
  • 4.36e3
  • 7.47e3
  • 8.00e3
  • 1.29e4
  • 1.32e4
93.85
  • 93.85
  • 85.39
  • 75.00
  • 73.23
  • 56.65
  • 55.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
2.13e3
  • 2.13e3
  • 2.99e3
  • 5.27e3
  • 5.27e3
  • 5.50e3
92.86
  • 92.86
  • 90.00
  • 82.35
  • 82.35
  • 81.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
2.13e3
  • 2.13e3
  • 2.13e3
  • 4.67e3
  • 4.98e3
  • 4.98e3
  • 9.96e3
  • 1.17e4
  • 1.24e4
  • 1.49e4
92.86
  • 92.86
  • 92.86
  • 84.37
  • 83.33
  • 83.33
  • 66.67
  • 60.70
  • 58.33
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.78e3
  • 2.78e3
90.68
  • 90.68
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
2.80e3
  • 2.80e3
  • 2.80e3
  • 6.72e3
  • 6.72e3
  • 7.47e3
  • 8.04e3
90.62
  • 90.62
  • 90.62
  • 77.49
  • 77.49
  • 74.98
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.98e3
  • 5.98e3
  • 7.47e3
79.99
  • 79.99
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0002005enteric nervous system
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:2001391anterior lateral line ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 66.67
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.50e3
  • 7.50e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.20
  • 74.20
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
8.14e3
  • 8.14e3
  • 1.08e4
  • 1.30e4
72.76
  • 72.76
  • 63.80
  • 56.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001314posterior lateral line ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 66.67
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.05e4
  • 1.05e4
  • 1.37e4
64.79
  • 64.79
  • 54.21
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.37e4
  • 1.49e4
62.50
  • 62.50
  • 60.50
  • 54.15
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 62.50
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.32
  • 61.32
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
60.39
  • 60.39
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
60.39
  • 60.39
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.20e4
  • 1.20e4
  • 1.28e4
  • 1.34e4
  • 1.39e4
  • 1.49e4
59.98
  • 59.98
  • 57.11
  • 54.99
  • 53.55
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
59.29
  • 59.29
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.52
  • 56.52
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 1.59e4
56.27
  • 56.27
  • 46.68
AEIR
  • AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
56.24
  • 56.24
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
54.30
  • 54.30
AEIR
  • AEIR
UBERON:0001700geniculate ganglion
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001701glossopharyngeal ganglion
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009127epibranchial ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005362vagus X ganglion
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001156posterior lateral line placode
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.16
  • 47.16
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.13
  • 47.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.79
  • 42.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.36
  • 41.36
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.99
  • 40.99
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.12
  • 40.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.14e4
  • 2.14e4
28.20
  • 28.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
25.04
  • 25.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX248082, BX321920
EnsemblENSDARG00000033234 (stmn2a)
Uniprot/SPTREMBLE7FE68, E7FE68_DANRE
ZFINZDB-GENE-041010-85 (stmn2a)

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