Gene: cabp1b - ENSDARG00000033411 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000033411
Name	cabp1b
Description	calcium binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040718-111]
Organism	Danio rerio (zebrafish)
Synonym(s)	cabp1, cabp1a, zgc:92680
Paralog(s)	4 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	2.16e3 2.16e3	92.76 92.76	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 11 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000019Gastrula:Shield ZFS:0000025Segmentation:10-13 somites ZFS:0000022Gastrula:Bud ZFS:0000023Segmentation:1-4 somites ZFS:0000018Gastrula:Germ-ring ZFS:0000024Segmentation:5-9 somites ZFS:0000021Gastrula:90%-epiboly ZFS:0000020Gastrula:75%-epiboly ZFS:0000017Gastrula:50%-epiboly UBERON:0000104life cycle	2.92e3 2.92e3 4.75e3 7.47e3 7.47e3 7.47e3 7.91e3 7.91e3 7.97e3 8.30e3 8.79e3 1.50e4	90.24 90.24 84.08 74.99 74.99 74.99 73.52 73.52 73.32 72.21 70.57 49.92	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	8.82e3 8.82e3 1.22e4	70.47 70.47 59.08	AEIR AEIR AEIR
UBERON:0002328	notochord	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.05e4 1.05e4	64.99 64.99	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.11e4 1.11e4 1.41e4	62.83 62.83 52.80	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	1.32e4 1.32e4 1.96e4 2.30e4 2.49e4 2.50e4	55.81 55.81 34.30 22.91 16.73 16.42	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.34e4 1.34e4	55.16 55.16	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.42e4 1.42e4	52.60 52.60	AEIR AEIR
UBERON:0001791	inner nuclear layer of retina	[+] 1 stage ZFS:0000036Larval:Day 4	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.57 40.57	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.80e4 1.80e4	39.64 39.64	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.88e4 1.88e4 2.44e4	36.92 36.92 18.24	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.28e4 2.28e4	23.49 23.49	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000019990 cabp1a	Compare expression	[+]
Vertebrata	4 genes ENSDARG00000002576 cabp5a ENSDARG00000019990 cabp1a ENSDARG00000052016 cabp2a ENSDARG00000052277 cabp2b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000033411.

Cross-references

Ensembl	ENSDARG00000033411 (cabp1b)
ZFIN	ZDB-GENE-040718-111 (cabp1b)
EMBL	BC076164, CU571062
Uniprot/SPTREMBL	Q6DH19, Q6DH19_DANRE