D. rerio Gene: cabp1b - ENSDARG00000033411 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033411
Namecabp1b
Descriptioncalcium binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040718-111]
OrganismDanio rerio (zebrafish)
Synonym(s)cabp1, cabp1a, zgc:92680
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.16e3
  • 2.16e3
92.76
  • 92.76
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000104life cycle
2.92e3
  • 2.92e3
  • 4.75e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
  • 7.97e3
  • 8.30e3
  • 8.79e3
  • 1.50e4
90.24
  • 90.24
  • 84.08
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 73.52
  • 73.32
  • 72.21
  • 70.57
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.82e3
  • 8.82e3
  • 1.22e4
70.47
  • 70.47
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.11e4
  • 1.11e4
  • 1.41e4
62.83
  • 62.83
  • 52.80
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.32e4
  • 1.32e4
  • 1.96e4
  • 2.30e4
  • 2.49e4
  • 2.50e4
55.81
  • 55.81
  • 34.30
  • 22.91
  • 16.73
  • 16.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000033Hatching:Long-pec
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.57
  • 40.57
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.80e4
  • 1.80e4
39.64
  • 39.64
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.88e4
  • 1.88e4
  • 2.44e4
36.92
  • 36.92
  • 18.24
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.49
  • 23.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Vertebrata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000033411.

Cross-references

EnsemblENSDARG00000033411 (cabp1b)
ZFINZDB-GENE-040718-111 (cabp1b)
EMBLBC076164, CU571062
Uniprot/SPTREMBLQ6DH19, Q6DH19_DANRE

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