D. rerio Gene: gpatch1 - ENSDARG00000033418 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033418
Namegpatch1
DescriptionG patch domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040914-65]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7135982, wu:fc11h11, wu:fj99h08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.50e3
  • 2.50e3
91.62
  • 91.62
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.00e3
  • 3.00e3
89.97
  • 89.97
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.19e3
  • 3.19e3
89.34
  • 89.34
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.21e3
  • 3.21e3
  • 3.30e3
  • 3.35e3
  • 3.44e3
  • 3.74e3
  • 4.07e3
  • 4.12e3
  • 4.24e3
  • 4.50e3
  • 4.60e3
  • 4.61e3
  • 5.23e3
  • 5.43e3
  • 5.51e3
  • 1.45e4
  • 1.46e4
  • 1.50e4
89.27
  • 89.27
  • 88.94
  • 88.79
  • 88.50
  • 87.48
  • 86.37
  • 86.19
  • 85.79
  • 84.92
  • 84.59
  • 84.56
  • 82.48
  • 81.81
  • 81.56
  • 51.56
  • 51.01
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.26e3
  • 3.26e3
  • 5.73e3
  • 5.99e3
  • 1.10e4
89.07
  • 89.07
  • 80.81
  • 79.96
  • 63.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.57e3
  • 3.57e3
  • 3.83e3
  • 4.08e3
  • 4.76e3
  • 4.92e3
  • 5.33e3
  • 5.82e3
  • 7.08e3
  • 7.58e3
  • 8.45e3
88.04
  • 88.04
  • 87.18
  • 86.35
  • 84.05
  • 83.54
  • 82.15
  • 80.53
  • 76.28
  • 74.63
  • 71.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.59e3
  • 3.59e3
87.99
  • 87.99
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.79e3
  • 3.79e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.80e3
  • 3.80e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
3.86e3
  • 3.86e3
  • 4.13e3
  • 4.41e3
  • 4.73e3
  • 5.10e3
  • 5.77e3
87.07
  • 87.07
  • 86.19
  • 85.24
  • 84.17
  • 82.94
  • 80.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.79
  • 86.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.63
  • 84.63
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.62
  • 84.62
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.84e3
  • 4.84e3
83.80
  • 83.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
83.48
  • 83.48
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
5.43e3
  • 5.43e3
  • 5.84e3
  • 6.20e3
  • 6.40e3
  • 7.93e3
81.83
  • 81.83
  • 80.45
  • 79.24
  • 78.58
  • 73.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.48e3
  • 5.48e3
  • 5.78e3
81.65
  • 81.65
  • 80.66
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
  • 6.82e3
81.10
  • 81.10
  • 77.15
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.72e3
  • 5.72e3
80.86
  • 80.86
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.16
  • 80.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.03
  • 80.03
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
  • 7.59e3
79.81
  • 79.81
  • 74.59
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.08e3
  • 6.08e3
  • 8.23e3
  • 8.67e3
79.63
  • 79.63
  • 72.44
  • 70.98
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
79.59
  • 79.59
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
77.41
  • 77.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.18
  • 77.18
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.84e3
  • 6.84e3
77.09
  • 77.09
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.05e3
  • 7.05e3
76.40
  • 76.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.93
  • 75.93
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
  • 7.99e3
74.22
  • 74.22
  • 73.24
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.13
  • 74.13
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
72.31
  • 72.31
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.46e3
  • 9.46e3
68.33
  • 68.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000033418 (gpatch1)
Uniprot/SPTREMBLG1K2G6, G1K2G6_DANRE
ZFINZDB-GENE-040914-65 (gpatch1)

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