D. rerio Gene: nxph1 - ENSDARG00000033447 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033447
Namenxph1
Descriptionneurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101108
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.46e3
  • 1.46e3
  • 9.46e3
  • 1.19e4
  • 1.20e4
95.12
  • 95.12
  • 68.32
  • 60.32
  • 59.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.79e3
  • 1.79e3
  • 8.92e3
94.02
  • 94.02
  • 70.15
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.05e3
  • 2.05e3
  • 1.01e4
93.15
  • 93.15
  • 66.10
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
3.13e3
  • 3.13e3
  • 6.12e3
  • 6.26e3
  • 7.70e3
  • 9.77e3
  • 1.04e4
  • 1.30e4
  • 1.39e4
  • 1.44e4
  • 1.47e4
  • 1.47e4
  • 1.50e4
89.54
  • 89.54
  • 79.53
  • 79.03
  • 74.21
  • 67.28
  • 65.05
  • 56.49
  • 53.61
  • 51.94
  • 50.85
  • 50.76
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
3.88e3
  • 3.88e3
  • 6.94e3
  • 1.25e4
  • 1.42e4
  • 1.45e4
  • 1.57e4
  • 1.58e4
  • 1.78e4
87.01
  • 87.01
  • 76.75
  • 58.19
  • 52.54
  • 51.40
  • 47.36
  • 47.15
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.97e3
  • 4.97e3
  • 5.20e3
  • 7.66e3
83.37
  • 83.37
  • 82.60
  • 74.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.62e3
  • 5.62e3
81.17
  • 81.17
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
6.71e3
  • 6.71e3
  • 7.36e3
  • 9.52e3
  • 9.69e3
  • 1.00e4
77.52
  • 77.52
  • 75.34
  • 68.13
  • 67.56
  • 66.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.42e3
  • 8.42e3
71.79
  • 71.79
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000204ventral part of telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 9.96e3
66.67
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0014912thalamic eminence
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.04e4
  • 1.04e4
  • 1.08e4
  • 1.74e4
65.22
  • 65.22
  • 63.77
  • 41.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
  • 1.23e4
61.09
  • 61.09
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
61.03
  • 61.03
AEIR
  • AEIR
UBERON:0001900ventral thalamus
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.25e4
59.50
  • 59.50
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.21e4
  • 1.21e4
59.46
  • 59.46
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.22e4
  • 1.22e4
  • 1.28e4
59.06
  • 59.06
  • 57.11
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.48
  • 57.48
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.89
  • 55.89
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.34
  • 51.34
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.39
  • 50.39
AEIR
  • AEIR
CL:0005000spinal cord interneuron
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.47
  • 45.47
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.02
  • 44.02
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.54
  • 43.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.84
  • 40.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.52
  • 40.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.43
  • 40.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.77
  • 30.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.38e4
  • 2.38e4
20.31
  • 20.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000033447.

Cross-references

EnsemblENSDARG00000033447 (nxph1)
ZFINZDB-GENE-040718-231 (nxph1)
EMBLBX571820, CR381594
Uniprot/SPTREMBLF1Q7T4, F1Q7T4_DANRE, F1QQ62, F1QQ62_DANRE

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