Gene: ube2j1 - ENSDARG00000033489 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000033489
Name	ube2j1
Description	ubiquitin-conjugating enzyme E2, J1 [Source:ZFIN;Acc:ZDB-GENE-040426-2853]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:63554
Orthologs(s)	20 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	3.35e3 3.35e3	88.80 88.80	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	4.29e3 4.29e3 5.45e3	85.62 85.62 81.74	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	4.48e3 4.48e3	85.00 85.00	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	5.17e3 5.17e3 6.86e3	82.69 82.69 77.04	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	6.26e3 6.26e3	79.03 79.03	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	6.49e3 6.49e3	78.27 78.27	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	6.62e3 6.62e3	77.84 77.84	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	6.64e3 6.64e3	77.75 77.75	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	6.95e3 6.95e3	76.72 76.72	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	7.12e3 7.12e3	76.16 76.16	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	7.22e3 7.22e3	75.84 75.84	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.25e3 7.25e3	75.71 75.71	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec	7.31e3 7.31e3 8.51e3 8.85e3 9.39e3 9.50e3	75.52 75.52 71.52 70.38 68.58 68.19	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	7.43e3 7.43e3	75.11 75.11	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	7.77e3 7.77e3 9.13e3	73.99 73.99 69.45	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	7.80e3 7.80e3 8.57e3	73.90 73.90 71.32	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	7.80e3 7.80e3 9.34e3	73.90 73.90 68.73	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.85e3 7.85e3	73.70 73.70	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	8.15e3 8.15e3	72.72 72.72	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	8.38e3 8.38e3	71.95 71.95	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	8.51e3 8.51e3	71.51 71.51	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.79e3 8.79e3	70.56 70.56	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	8.85e3 8.85e3	70.35 70.35	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	9.01e3 9.01e3	69.83 69.83	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.10e4 1.10e4	63.12 63.12	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	20 genes ENSG00000198833 UBE2J1 ENSMUSG00000028277 Ube2j1 ENSGGOG00000013375 UBE2J1 ENSMMUG00000015261 UBE2J1 ENSRNOG00000007434 Ube2j1 ENSBTAG00000018436 UBE2J1 ENSSSCG00000004317 UBE2J1 ENSECAG00000012492 UBE2J1 ENSOCUG00000005288 UBE2J1 ENSCAFG00000003101 UBE2J1 ENSFCAG00000028473 UBE2J1 ENSCPOG00000001432 ENSCPOG00000023888 ENSEEUG00000004025 UBE2J1 ENSMODG00000012241 ENSMODG00000018277 ENSOANG00000000527 UBE2J1 ENSGALG00000015775 UBE2J1 ENSACAG00000014560 UBE2J1 ENSXETG00000019113 ube2j1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000033489.

Cross-references

Ensembl	ENSDARG00000033489 (ube2j1)
ZFIN	ZDB-GENE-040426-2853 (ube2j1)
EMBL	BC061451, BX248418
Uniprot/SPTREMBL	Q6P7Y0, Q6P7Y0_DANRE