D. rerio Gene: rorb - ENSDARG00000033498 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033498
Namerorb
DescriptionRAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
OrganismDanio rerio (zebrafish)
Synonym(s)nr1f2, rzrb, sb:eu943

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
1.17e3
  • 1.17e3
  • 3.73e3
  • 5.69e3
  • 6.79e3
  • 7.47e3
  • 7.80e3
96.07
  • 96.07
  • 87.50
  • 80.94
  • 77.26
  • 74.99
  • 73.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.38e3
  • 1.38e3
  • 1.29e4
95.40
  • 95.40
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.49e3
  • 3.49e3
88.32
  • 88.32
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
4.57e3
  • 4.57e3
  • 9.85e3
  • 1.13e4
  • 1.70e4
  • 1.75e4
84.71
  • 84.71
  • 67.02
  • 62.32
  • 43.06
  • 41.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 9.33e3
  • 1.02e4
  • 1.21e4
  • 1.23e4
  • 1.26e4
  • 1.26e4
  • 1.41e4
83.34
  • 83.34
  • 68.74
  • 65.77
  • 59.50
  • 58.80
  • 57.87
  • 57.87
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 7.47e3
  • 8.30e3
  • 9.33e3
  • 9.96e3
  • 1.09e4
  • 1.09e4
  • 1.12e4
83.34
  • 83.34
  • 74.99
  • 72.22
  • 68.74
  • 66.66
  • 63.63
  • 63.63
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 9.60e3
  • 1.07e4
  • 1.22e4
75.00
  • 75.00
  • 67.85
  • 64.28
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010202lateral line
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
7.47e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
  • 1.28e4
74.99
  • 74.99
  • 73.52
  • 73.52
  • 73.52
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.02
  • 61.02
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.19e4
  • 1.19e4
  • 1.22e4
59.99
  • 59.99
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
1.23e4
  • 1.23e4
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.25
  • 56.25
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.36e4
  • 1.41e4
56.22
  • 56.22
  • 54.53
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.39e4
  • 1.39e4
  • 1.77e4
53.50
  • 53.50
  • 40.83
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.83
  • 29.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX537293, CU929335
EnsemblENSDARG00000033498 (rorb)
Uniprot/SPTREMBLF1R6M2, F1R6M2_DANRE
ZFINZDB-GENE-061204-2 (rorb)

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