D. rerio Gene: mtrf1 - ENSDARG00000033579 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033579
Namemtrf1
Descriptionmitochondrial translational release factor 1 [Source:ZFIN;Acc:ZDB-GENE-050220-8]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:113104
Orthologs(s)1 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.07
  • 78.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.21e3
  • 7.21e3
75.86
  • 75.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.76
  • 74.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.03
  • 74.03
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.78e3
  • 7.78e3
  • 7.87e3
73.94
  • 73.94
  • 73.66
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.46
  • 73.46
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.98e3
  • 7.98e3
  • 9.21e3
73.27
  • 73.27
  • 69.16
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
69.61
  • 69.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.57
  • 69.57
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
67.71
  • 67.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.70e3
  • 9.70e3
67.54
  • 67.54
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.69
  • 66.69
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.27
  • 66.27
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
  • 2.14e4
61.30
  • 61.30
  • 28.50
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
  • 1.23e4
  • 1.26e4
  • 1.57e4
  • 1.83e4
60.85
  • 60.85
  • 58.78
  • 57.95
  • 47.31
  • 38.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.22e4
  • 1.22e4
  • 1.48e4
59.25
  • 59.25
  • 50.57
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.84
  • 58.84
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.28e4
58.03
  • 58.03
  • 57.29
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.69
  • 56.69
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.88
  • 55.88
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.32e4
  • 1.32e4
55.83
  • 55.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.46
  • 44.46
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.25
  • 31.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000033579.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000033579.

Cross-references

EnsemblENSDARG00000033579 (mtrf1)
ZFINZDB-GENE-050220-8 (mtrf1)
EMBLCABZ01075211, CABZ01075212, CABZ01075213
Uniprot/SPTREMBLF1QCR1, F1QCR1_DANRE

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