D. rerio Gene: map1lc3a - ENSDARG00000033609 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033609
Namemap1lc3a
Descriptionmicrotubule-associated protein 1 light chain 3 alpha [Source:ZFIN;Acc:ZDB-GENE-040426-2232]
OrganismDanio rerio (zebrafish)
Synonym(s)map1-lc3a, zgc:77094

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
533
  • 533
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
722
  • 722
97.59
  • 97.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
830
  • 830
  • 1.75e3
97.22
  • 97.22
  • 94.14
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
899
  • 899
96.99
  • 96.99
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.05e3
  • 1.05e3
  • 8.14e3
  • 1.49e4
96.48
  • 96.48
  • 72.74
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
95.86
  • 95.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.42
  • 95.42
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
  • 1.81e3
95.18
  • 95.18
  • 93.94
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.46e3
  • 1.46e3
  • 4.00e3
  • 4.74e3
  • 5.10e3
  • 5.99e3
  • 7.44e3
  • 8.30e3
  • 8.61e3
  • 8.62e3
  • 9.49e3
95.11
  • 95.11
  • 86.60
  • 84.13
  • 82.93
  • 79.96
  • 75.10
  • 72.22
  • 71.19
  • 71.15
  • 68.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.51e3
  • 1.51e3
  • 2.69e3
  • 3.71e3
  • 5.29e3
  • 5.39e3
  • 6.50e3
  • 6.74e3
  • 7.01e3
  • 7.01e3
  • 7.04e3
  • 7.15e3
  • 7.47e3
  • 7.47e3
  • 7.72e3
  • 8.63e3
  • 1.20e4
  • 1.33e4
  • 1.44e4
94.96
  • 94.96
  • 90.98
  • 87.59
  • 82.29
  • 81.94
  • 78.23
  • 77.43
  • 76.54
  • 76.52
  • 76.42
  • 76.05
  • 74.99
  • 74.99
  • 74.15
  • 71.10
  • 59.81
  • 55.48
  • 51.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.60e3
  • 1.60e3
  • 5.44e3
  • 6.52e3
  • 9.98e3
94.66
  • 94.66
  • 81.78
  • 78.16
  • 66.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.65e3
  • 1.65e3
94.48
  • 94.48
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.17
  • 94.17
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
93.14
  • 93.14
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
93.03
  • 93.03
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.17e3
  • 2.17e3
  • 3.00e3
  • 3.35e3
92.74
  • 92.74
  • 89.96
  • 88.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.65
  • 91.65
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.67e3
  • 2.67e3
  • 3.00e3
91.05
  • 91.05
  • 89.95
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.86
  • 90.86
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.38e3
  • 4.38e3
85.32
  • 85.32
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.39e3
  • 5.39e3
81.94
  • 81.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
5.48e3
  • 5.48e3
  • 5.74e3
  • 7.38e3
  • 7.64e3
  • 1.02e4
  • 1.10e4
81.65
  • 81.65
  • 80.79
  • 75.30
  • 74.40
  • 65.78
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.26e3
  • 6.26e3
79.02
  • 79.02
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.42e3
  • 6.42e3
78.49
  • 78.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.59e3
  • 6.59e3
77.92
  • 77.92
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.96e3
  • 6.96e3
76.70
  • 76.70
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.32e3
  • 7.32e3
75.48
  • 75.48
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.41e3
  • 7.41e3
75.19
  • 75.19
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.51e4
62.47
  • 62.47
  • 60.43
  • 49.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.71e4
  • 1.71e4
42.64
  • 42.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAB264293, BC067189, CU467888
EnsemblENSDARG00000033609 (map1lc3a)
Uniprot/SPTREMBLQ6NX90, Q6NX90_DANRE
ZFINZDB-GENE-040426-2232 (map1lc3a)

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