D. rerio Gene: stmn1b - ENSDARG00000033655 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033655
Namestmn1b
Descriptionstathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
OrganismDanio rerio (zebrafish)
Synonym(s)fj38b07, fj43c10, stathmin 1/oncoprotein 18b, wu:fj38b07, wu:fj43c10, zgc:110159

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
110
  • 110
  • 2.38e3
  • 7.89e3
99.64
  • 99.64
  • 92.04
  • 73.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
175
  • 175
  • 468
99.42
  • 99.42
  • 98.44
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
317
  • 317
  • 490
  • 1.65e3
  • 1.96e3
  • 1.96e3
  • 2.42e3
  • 2.75e3
  • 8.26e3
  • 1.26e4
  • 1.48e4
98.94
  • 98.94
  • 98.36
  • 94.48
  • 93.45
  • 93.44
  • 91.89
  • 90.81
  • 72.34
  • 57.75
  • 50.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
360
  • 360
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
369
  • 369
  • 594
  • 647
  • 1.10e3
  • 1.13e3
  • 2.14e3
  • 3.28e3
  • 9.92e3
  • 1.16e4
  • 1.23e4
  • 1.32e4
  • 1.33e4
  • 1.34e4
  • 1.41e4
  • 1.42e4
  • 1.42e4
98.77
  • 98.77
  • 98.02
  • 97.84
  • 96.30
  • 96.22
  • 92.84
  • 89.01
  • 66.80
  • 61.10
  • 58.67
  • 55.66
  • 55.48
  • 55.17
  • 52.68
  • 52.49
  • 52.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
444
  • 444
98.52
  • 98.52
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
473
  • 473
  • 766
  • 772
98.42
  • 98.42
  • 97.44
  • 97.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
559
  • 559
  • 914
  • 2.42e3
  • 3.69e3
  • 7.80e3
  • 8.96e3
98.13
  • 98.13
  • 96.94
  • 91.90
  • 87.65
  • 73.90
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
709
  • 709
97.63
  • 97.63
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.43
  • 93.43
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
2.49e3
  • 2.49e3
  • 4.27e3
  • 6.97e3
  • 8.71e3
91.67
  • 91.67
  • 85.71
  • 76.66
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.50
  • 91.50
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.82e3
  • 2.82e3
90.55
  • 90.55
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.73e3
  • 3.73e3
  • 3.98e3
  • 3.98e3
  • 7.47e3
  • 7.47e3
  • 8.71e3
  • 9.60e3
87.50
  • 87.50
  • 86.66
  • 86.66
  • 74.99
  • 74.99
  • 70.82
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
4.08e3
  • 4.08e3
  • 5.98e3
  • 5.98e3
  • 1.10e4
86.36
  • 86.36
  • 79.99
  • 79.99
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.39e3
  • 4.39e3
  • 4.39e3
  • 4.72e3
  • 6.40e3
  • 6.97e3
  • 8.04e3
  • 8.54e3
85.29
  • 85.29
  • 85.29
  • 84.20
  • 78.56
  • 76.66
  • 73.07
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.23e3
  • 5.23e3
82.48
  • 82.48
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
5.26e3
  • 5.26e3
82.38
  • 82.38
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.85e3
  • 5.85e3
  • 5.98e3
  • 5.98e3
80.42
  • 80.42
  • 79.99
  • 79.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.19
  • 80.19
AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
5.97e3
  • 5.97e3
  • 5.97e3
  • 5.97e3
  • 7.47e3
80.00
  • 80.00
  • 80.00
  • 80.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 5.98e3
  • 6.94e3
79.99
  • 79.99
  • 79.99
  • 76.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.73
  • 77.73
AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.59e3
  • 8.59e3
71.23
  • 71.23
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.61e3
  • 8.61e3
71.16
  • 71.16
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.22e3
  • 9.22e3
69.13
  • 69.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.39e3
  • 9.39e3
68.56
  • 68.56
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
64.18
  • 64.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.12e4
62.84
  • 62.84
  • 62.37
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
61.88
  • 61.88
  • 59.98
  • 58.31
  • 58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.18e4
  • 1.18e4
  • 1.20e4
60.48
  • 60.48
  • 59.78
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.29e4
60.04
  • 60.04
  • 56.90
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.22e4
  • 1.22e4
59.31
  • 59.31
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.31e4
  • 1.33e4
57.14
  • 57.14
  • 56.22
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.34e4
56.65
  • 56.65
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.36e4
  • 1.39e4
56.24
  • 56.24
  • 54.53
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.58
  • 52.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.45e4
  • 1.45e4
  • 1.49e4
  • 1.53e4
  • 1.75e4
51.53
  • 51.53
  • 49.96
  • 48.88
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.50e4
  • 1.50e4
  • 1.63e4
49.75
  • 49.75
  • 45.47
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.15
  • 34.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC092763, CR626886
EnsemblENSDARG00000033655 (stmn1b)
Uniprot/SPTREMBLQ568Q7, Q568Q7_DANRE
ZFINZDB-GENE-050417-397 (stmn1b)

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