D. rerio Gene: scd - ENSDARG00000033662 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033662
Namescd
Descriptionstearoyl-CoA desaturase (delta-9-desaturase) [Source:ZFIN;Acc:ZDB-GENE-031106-3]
OrganismDanio rerio (zebrafish)
Synonym(s)scd1
Orthologs(s)6 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.85
  • 93.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.68
  • 88.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
83.98
  • 83.98
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.02e3
  • 5.02e3
  • 1.87e4
83.19
  • 83.19
  • 37.43
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.50
  • 82.50
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.49e3
  • 6.49e3
78.26
  • 78.26
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 7.97e3
  • 8.71e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
75.00
  • 75.00
  • 73.32
  • 70.82
  • 70.57
  • 69.99
  • 69.99
  • 69.98
  • 69.43
  • 67.48
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.97e3
  • 8.97e3
69.97
  • 69.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.04
  • 64.04
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.02
  • 64.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.13e4
  • 1.13e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.83e4
62.31
  • 62.31
  • 40.56
  • 40.38
  • 40.18
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.80
  • 57.80
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.20
  • 57.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.87
  • 55.87
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.56
  • 54.56
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.48e4
  • 1.48e4
  • 1.67e4
50.29
  • 50.29
  • 44.09
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.50e4
  • 1.50e4
  • 1.54e4
  • 1.75e4
49.86
  • 49.86
  • 48.59
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.48
  • 44.48
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.17
  • 43.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.36
  • 38.36
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.85e4
  • 1.85e4
38.06
  • 38.06
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.88e4
  • 1.88e4
  • 1.89e4
  • 2.06e4
  • 2.07e4
36.96
  • 36.96
  • 36.56
  • 31.05
  • 30.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.96e4
  • 1.96e4
  • 2.02e4
34.22
  • 34.22
  • 32.44
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.07
  • 32.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000033662.

Cross-references

EnsemblENSDARG00000033662 (scd)
ZFINZDB-GENE-031106-3 (scd)
EMBLFP102054
Uniprot/SPTREMBLF1QG70, F1QG70_DANRE

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