D. rerio Gene: tpma - ENSDARG00000033683 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033683
Nametpma
Descriptionalpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
OrganismDanio rerio (zebrafish)
Synonym(s)fb37a09, tm, tpm1, tropomyosin alpha chain, wu:fb37a09
Orthologs(s)8 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
14.0
  • 14.0
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
14.6
  • 14.6
  • 35.0
  • 55.4
  • 94.3
  • 232
  • 256
  • 375
  • 2.67e3
  • 7.65e3
  • 1.12e4
99.95
  • 99.95
  • 99.89
  • 99.82
  • 99.69
  • 99.23
  • 99.15
  • 98.75
  • 91.07
  • 74.37
  • 62.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
19.0
  • 19.0
99.94
  • 99.94
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
23.0
  • 23.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
59.0
  • 59.0
  • 166
  • 169
99.81
  • 99.81
  • 99.45
  • 99.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
116
  • 116
99.61
  • 99.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
146
  • 146
  • 194
  • 246
  • 247
  • 258
  • 341
  • 514
  • 6.68e3
  • 1.09e4
  • 1.32e4
99.52
  • 99.52
  • 99.35
  • 99.18
  • 99.18
  • 99.14
  • 98.86
  • 98.28
  • 77.64
  • 63.36
  • 55.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
186
  • 186
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
222
  • 222
99.26
  • 99.26
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
261
  • 261
  • 1.46e3
99.13
  • 99.13
  • 95.12
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
802
  • 802
  • 1.28e4
97.32
  • 97.32
  • 57.18
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
  • 8.13e3
87.59
  • 87.59
  • 72.77
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.79e3
  • 3.79e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
83.72
  • 83.72
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
5.60e3
  • 5.60e3
  • 8.30e3
  • 8.79e3
  • 9.96e3
81.24
  • 81.24
  • 72.21
  • 70.57
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
5.72e3
  • 5.72e3
80.84
  • 80.84
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
6.80e3
  • 6.80e3
  • 1.75e4
77.22
  • 77.22
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
  • 9.83e3
76.31
  • 76.31
  • 67.09
AEIR
  • AEIR
  • AEIR
ZFA:0001373migratory slow muscle precursor cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.37
  • 72.37
AEIR
  • AEIR
CL:0000190fast muscle cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
8.30e3
  • 8.30e3
  • 1.49e4
72.22
  • 72.22
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.19e4
  • 1.31e4
70.00
  • 70.00
  • 59.99
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
8.96e3
  • 8.96e3
  • 1.12e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.49e4
69.98
  • 69.98
  • 62.49
  • 61.09
  • 60.50
  • 59.98
  • 58.31
  • 58.31
  • 58.31
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.28e3
  • 9.28e3
  • 9.96e3
  • 1.16e4
  • 1.18e4
68.94
  • 68.94
  • 66.64
  • 60.99
  • 60.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
9.71e3
  • 9.71e3
  • 1.08e4
67.48
  • 67.48
  • 63.87
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.18e4
  • 1.18e4
64.28
  • 64.28
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.16e4
61.10
  • 61.10
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
56.28
  • 56.28
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.07
  • 53.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.30
  • 49.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
24.85
  • 24.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000033683.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000033683 (tpma)
ZFINZDB-GENE-990415-269 (tpma)
EMBLAF180892, BC062870, M24635
Uniprot/SWISSPROTP13104, TPM1_DANRE

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