D. rerio Gene: trappc13 - ENSDARG00000033768 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033768
Nametrappc13
Descriptiontrafficking protein particle complex 13 [Source:ZFIN;Acc:ZDB-GENE-030131-9775]
OrganismDanio rerio (zebrafish)
Synonym(s)cb318, sb:cb318, wu:fa04a08, zgc:73187

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
433
  • 433
98.55
  • 98.55
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
686
  • 686
97.71
  • 97.71
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
  • 6.40e3
  • 7.20e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.70e3
  • 8.80e3
  • 8.93e3
  • 9.01e3
  • 9.17e3
  • 9.67e3
  • 9.71e3
  • 9.74e3
  • 1.00e4
  • 1.01e4
  • 1.01e4
  • 1.02e4
  • 1.43e4
  • 1.49e4
95.54
  • 95.54
  • 78.56
  • 75.88
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 70.87
  • 70.55
  • 70.12
  • 69.84
  • 69.29
  • 67.61
  • 67.49
  • 67.40
  • 66.53
  • 66.33
  • 66.06
  • 65.91
  • 52.23
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.60e3
  • 1.60e3
  • 3.73e3
  • 3.77e3
  • 4.06e3
  • 6.30e3
94.65
  • 94.65
  • 87.51
  • 87.40
  • 86.42
  • 78.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.10e3
  • 3.10e3
  • 4.67e3
  • 5.31e3
  • 6.11e3
89.61
  • 89.61
  • 84.38
  • 82.22
  • 79.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.24e3
  • 3.24e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.51e3
  • 3.51e3
88.25
  • 88.25
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
86.57
  • 86.57
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
  • 8.72e3
85.80
  • 85.80
  • 70.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.50e3
  • 4.50e3
84.92
  • 84.92
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
4.95e3
  • 4.95e3
  • 6.36e3
  • 1.49e4
83.43
  • 83.43
  • 78.72
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
82.70
  • 82.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.24e3
  • 5.24e3
  • 1.41e4
82.46
  • 82.46
  • 52.81
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
5.26e3
  • 5.26e3
  • 8.84e3
  • 9.50e3
  • 1.08e4
  • 1.08e4
  • 1.11e4
82.38
  • 82.38
  • 70.40
  • 68.20
  • 63.80
  • 63.76
  • 62.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.30
  • 82.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.02
  • 82.02
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.21
  • 81.21
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.82e3
  • 5.82e3
  • 6.14e3
  • 6.24e3
  • 6.32e3
  • 8.12e3
  • 8.18e3
  • 8.35e3
  • 8.48e3
  • 8.67e3
  • 1.02e4
80.50
  • 80.50
  • 79.43
  • 79.12
  • 78.83
  • 72.82
  • 72.62
  • 72.05
  • 71.61
  • 70.98
  • 66.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.64
  • 79.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.99
  • 77.99
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.63e3
  • 6.63e3
  • 7.90e3
  • 8.61e3
77.81
  • 77.81
  • 73.53
  • 71.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
  • 8.09e3
77.79
  • 77.79
  • 72.91
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.44
  • 77.44
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.96e3
  • 6.96e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.91e3
  • 7.91e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.63
  • 72.63
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
  • 8.42e3
71.94
  • 71.94
  • 71.81
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.99e3
  • 8.99e3
69.90
  • 69.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
68.36
  • 68.36
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
9.60e3
  • 9.60e3
  • 9.96e3
  • 1.07e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
  • 1.16e4
67.85
  • 67.85
  • 66.65
  • 64.26
  • 62.48
  • 61.75
  • 61.09
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.21
  • 66.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC059537, BC071349
EnsemblENSDARG00000033768 (trappc13)
Uniprot/SWISSPROTQ6PBY7, TPC13_DANRE
ZFINZDB-GENE-030131-9775 (trappc13)

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