D. rerio Gene: fat3a - ENSDARG00000033840 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000033840
Namefat3a
DescriptionFAT atypical cadherin 3a [Source:ZFIN;Acc:ZDB-GENE-060929-1254]
OrganismDanio rerio (zebrafish)
Synonym(s)fat3, zgc:153498, zmp:0000000581

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
3.73e3
  • 3.73e3
  • 9.96e3
87.50
  • 87.50
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 1.49e4
83.34
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.84e3
  • 5.84e3
80.44
  • 80.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.14e4
  • 1.14e4
  • 1.65e4
61.80
  • 61.80
  • 44.61
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.16e4
  • 1.16e4
61.00
  • 61.00
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.87
  • 58.87
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.33e4
  • 1.33e4
  • 1.55e4
  • 1.71e4
  • 1.71e4
  • 1.87e4
55.55
  • 55.55
  • 48.11
  • 42.66
  • 42.66
  • 37.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.72
  • 50.72
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
  • 1.91e4
42.50
  • 42.50
  • 36.01
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.72e4
  • 1.72e4
42.34
  • 42.34
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 2.06e4
36.23
  • 36.23
  • 31.07
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.63
  • 29.63
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.41
  • 29.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.38
  • 28.38
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.88
  • 26.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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