Gene: derl3 - ENSDARG00000033871 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000033871
Name	derl3
Description	derlin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1324]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:63991
Orthologs(s)	7 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	975 975	96.74 96.74	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.06e3 1.06e3	96.44 96.44	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.04e3 2.04e3	93.18 93.18	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	3.32e3 3.32e3	88.88 88.88	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	4.02e3 4.02e3	86.56 86.56	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	4.30e3 4.30e3	85.62 85.62	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	4.95e3 4.95e3 8.87e3	83.44 83.44 70.31	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	5.01e3 5.01e3 1.06e4	83.22 83.22 64.34	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	5.22e3 5.22e3	82.53 82.53	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.35e3 5.35e3	82.10 82.10	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	6.95e3 6.95e3	76.73 76.73	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	7.31e3 7.31e3 9.93e3	75.51 75.51 66.75	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	7.48e3 7.48e3	74.94 74.94	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	7.63e3 7.63e3	74.45 74.45	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec	7.75e3 7.75e3 8.73e3 1.02e4 1.30e4 1.39e4	74.04 74.04 70.77 65.77 56.45 53.51	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	7.79e3 7.79e3	73.93 73.93	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.86e3 7.86e3	73.67 73.67	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	9.39e3 9.39e3	68.57 68.57	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	9.67e3 9.67e3	67.63 67.63	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.02e4 1.02e4 1.31e4	65.69 65.69 56.26	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.74 63.74	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.10e4 1.10e4 1.25e4	63.10 63.10 58.14	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.18e4 1.18e4	60.40 60.40	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.73 59.73	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.70 55.70	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	7 genes FBgn0038438 Der-2 WBGene00020109 R151.6 FBgn0093531 GF16510 FBgn0146226 GI23500 FBgn0191758 GD20283 FBgn0197540 GJ10254 FBgn0243338 GE26308	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000033871.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	1 gene ENSDARG00000042401 derl2	Compare expression	[+]
Eukaryota	2 genes ENSDARG00000021905 derl1 ENSDARG00000042401 derl2	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000033871.

Cross-references

Ensembl	ENSDARG00000033871 (derl3)
ZFIN	ZDB-GENE-040426-1324 (derl3)
EMBL	BX640478
Uniprot/SPTREMBL	F1R121, F1R121_DANRE