Gene: spty2d1 - ENSDARG00000033889 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000033889
Name	spty2d1
Description	SPT2 chromatin protein domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050522-212]
Organism	Danio rerio (zebrafish)
Synonym(s)	wu:fb01d08, zgc:111826
Orthologs(s)	19 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	651 651 2.98e3	97.82 97.82 90.01	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	840 840 1.50e4	97.19 97.19 49.89	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.13e3 1.13e3	96.22 96.22	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.95e3 1.95e3	93.47 93.47	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.24e3 2.24e3	92.51 92.51	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5	2.27e3 2.27e3 3.71e3 5.16e3 5.88e3 6.20e3	92.40 92.40 87.59 82.72 80.31 79.25	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.43e3 2.43e3	91.87 91.87	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	2.75e3 2.75e3 1.45e4	90.81 90.81 51.33	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	2.80e3 2.80e3	90.63 90.63	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	2.97e3 2.97e3	90.04 90.04	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	3.20e3 3.20e3	89.29 89.29	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	3.21e3 3.21e3	89.26 89.26	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	3.30e3 3.30e3	88.95 88.95	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	3.43e3 3.43e3	88.52 88.52	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	3.51e3 3.51e3	88.24 88.24	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	3.75e3 3.75e3	87.44 87.44	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	3.89e3 3.89e3 6.27e3	86.97 86.97 78.99	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	4.02e3 4.02e3 4.87e3	86.53 86.53 83.70	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	4.08e3 4.08e3	86.33 86.33	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	4.21e3 4.21e3	85.91 85.91	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	4.56e3 4.56e3	84.74 84.74	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	4.63e3 4.63e3	84.49 84.49	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	4.95e3 4.95e3	83.41 83.41	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	5.77e3 5.77e3 5.96e3	80.67 80.67 80.06	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	6.07e3 6.07e3	79.67 79.67	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	6.08e3 6.08e3 7.87e3	79.65 79.65 73.65	AEIR AEIR AEIR
UBERON:0000465	material anatomical entity	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	8.96e3 8.96e3 9.96e3 1.16e4	69.99 69.99 66.66 61.09	AEIR AEIR AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.94 49.94	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole)	19 genes ENSG00000179119 SPTY2D1 ENSMUSG00000049516 Spty2d1 ENSPTRG00000003426 SPTY2D1 ENSGGOG00000010379 SPTY2D1 ENSMMUG00000019329 SPTY2D1 ENSRNOG00000050806 Spty2d1 ENSBTAG00000001660 SPTY2D1 ENSSSCG00000013361 ENSECAG00000011055 SPTY2D1 ENSOCUG00000025674 SPTY2D1 ENSCAFG00000009340 SPTY2D1 ENSFCAG00000015743 SPTY2D1 ENSCPOG00000012002 SPTY2D1 ENSEEUG00000003811 SPTY2D1 ENSMODG00000005223 ENSMODG00000006373 ENSOANG00000015821 SPTY2D1 ENSGALG00000006355 SPTY2D1 ENSACAG00000000064 SPTY2D1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000033889.

Cross-references

Ensembl	ENSDARG00000033889 (spty2d1)
ZFIN	ZDB-GENE-050522-212 (spty2d1)
EMBL	BX005383, CT573392
Uniprot/SPTREMBL	F1QNL9, F1QNL9_DANRE, F1R3H5, F1R3H5_DANRE, F1R8W5, F1R8W5_DANRE